Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0236 ATGATGATGAAGGAGATTTTTAATGGATACGCTGATTATTTCTCATGGATTTGTCTCAAGAATTTTGACTTCACTTCTTTCTGTTCACAAAGGAGCACAATAGACACTATAAATCTAATTTTCCTCTGTGTCTTCTACGCTTCCATCATTCTCAATTTAATCAGAAGAAATTTTATAAATGAAAGTCATACCAAAACCAGGTTTTTCCTTTTAGTCTCTATCTGTTGTGCTATCACTAGCGTTGTGTTTTACAGTATTGCCCTGTGGAGTCTCATAGCCAAAACTGGGAACTCCATGGCTAACCACCTCAGCTGGTTAGCATGCCTTGTACGAGGATTTGTTTGGACTTCTTTGGCAGTTTCTTTGCTTGTTCAGGGACACAAATGGATCAAAATTCTAAACTCTGTCTGGTGGGCATGTTCCTTTGCGCTAGCTTCGGCTCTCCACATTGAAATTCTGGTTAGAAAGCATGCAATAGAAATTTTCGATGTCCTACTATGGTTCTTACACACGCTTCTTCTCTTCTGTGCCTTCCAAAACCTTGGTTACTTTGTCAATCAAAATGAGCTAAAAAGTTTATCAGAACCATTGTTAGCTCGGGAAGTTGACACAGAAGAAACAGGACTAGGTCGTGCTTCCTTTCTGAGCAAGTTAACTTTCTCTTGGGTTAACTCCTTACTCAGTTTGGGTTACTCAAGGCCACTATCTCTTGAAGACATCCCTTCCCTTCTCTCTGAAGATAAGGCAGACCTATCCCACAAAAACTTCAAGCATGCATGGCAATCCCTTGCGAGGGAGAGAAGCAAGAACAACACTAAGAACTTAGTGTTTTGGTCCATTGTTAGAACTCACTTAAAAGAGAACATATTAATATCTGTTTACGCATTGCTCAGAACCATTGCTGTGACTGTTTCTCCTTTAATACTCTATGCTTTTGTCAACTTTTCGAATAGTAGGGATTCCGGGGAGACAGATCTCAGAGAAGGTCTTACCATAGTGGGTTTTCTTATTCTCTCCAAAGTGGTTGATTCTGTGTCCCAGAGACACTGGTTTTTTTGTACCAGGAGGTCGGGGTTGAAAATGAGATCAGCTCTGATGGTTGCAGTGTATGAAAAACAACTAAAGCTTTCAAACTCAGCAAGGACACGACACTCAACAGGTGAAATTGTGAATTACATTGCTGTTGATGCGTATCGCATGGGAGAATTTCCATGGTGGTTTCATCTAACATGGGCATGTACATTGCAACTTCTTCTATCTATCAGTATCCTGTATGGAGTTGTGGGAATAGGTGCACTTCCTGGTGTAATCCCTCTTCTTATATGTGGACTTCTCAATGTACCATTTGCCAAGATCCTACAAAGGTGCATGGCACAGTTCATGATTTCACAGGATGAGCGTCTTAGAGCAACTTCAGAAATTCTAAATAGCATGAAAATCATCAAGTTACAGTCCTGGGAAGACAAATTCAAGAGTTTGGTTGAGAACCTACGTGCGAAAGAGTTCATTTGGCTATCTAAGGCACAGATGTTGAAAGCTTATGGGTCATTTTTATATTGGATGTCTCCTACCATCGTTTCTGCTGTTGTTTTNNTCGGTTGTGCTGTTTTCAATAGTGCTCCATTAAATGCNGGGACCATATTTACAGTTCTTNCAACGTTGANGAACTTGGCAGAACCTGTTCGAATGATTCCNGAGGCTNTATCTNTTCTGATCCAAGTTAAGGTATCTTTTGATCGTCTNAATACCTTTTTGTTTGACGAAGAACTAGATAGCAGTGATGGTAGCAGAAGCTATAAAAACCGAAGTTCAATTAATGCGGTAGAAATCCAAGCTGGCAACTTCATTTGGGACCATGAATCAGTTTCCCCAACTTTAAGAGATGTGAATTTAGAAATCAAGTGGGGACAGAAAGTTGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATATTAGGAGAGATTCCCAAGATCTCAGGAACTGTTAATGTGTTCGGCAACATAGCATATGTTTCTCAAACTTCTTGGATTCAAAGTGGGACGGTTCGAGAGAATATATTATTCGGCAAGCCAATGGAGAAAACAAGATACGAGANTGCCATTAGAGTTTGTGCCTTGGATAAGGATATCAATGATTTTAGNCATGGTGATCTTACAGAAATAGGTCAGCGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTNGCTCGTGCTGTCTACAATGATGCTGACATTTATCTCCTCGATGACCCTTTCAGTGCAGTTGATGCTCACACTGCTGCTATCCTTTTCAAAGACTGTGTAATGACGGCTCTAAGAGAAAAAACAGTCATTCTAGTGACACATCAAGTGGAGTTTCTCTCGGAAGTTGATACAATCCTGGTAATGGAAGGTGGAAAAGTTACTGAATCAGGAAAGTATGAGAATCTCTTAACAACTGGGACTGCATTTGAACAACTTGTGAGCGCTCACAGGGATGCAATTACAGAGTTGGATCAGAATAATGAGAACAGAACTCATAGAGAAGAGTCTCAAGGTGTTTATAAAAATCAAAGTGAGGAGGAGATTTCTACGGAGGGCCAACTTGGGATGCAACTTACACAAGAAGAAGAAAAAGAGATTGGTGATGTCGGCTTGAAGACATTCTGGGATTATATTTCCTTTTCCAGGGGTTCATTGAGGCTGTTTTATATAATTTTGGCACAATGTGCTTTTGTTGCTTTACAGACTGCATCAACGGTTTGGCTTGCTTTAGCCATTGATATTCCAAAAATAACTAGTGCCTTCTTGGTTGGGGTGTACTCATTAATTTCATTTTCTGGTGCTGCATTGATATATATAAGGTCTCTCTTGACCGCTTACCTTGGGTTAAATGCTTCCAAAGATTTCTTCACAAGTTTCAATACTGCTATCTTCAATGCTCCTATGCTGTTCTTTGACTCAACCCCCGTAGGAAGGATTTTAACAAGAGCTTCATCAGATTTAAGTACTTTGGATTTTGACATACCTTATACGATCACCTTTGTAACATGTGTACCAATTGAAATTTTGGTAATGATTGGTGCAATGGTTTTAGTGACATGGCCAGTTCTCATTGTTGCCATTCCTGCAATAGTTGCATCAAAATATGTTCAGGAATATTATCAAGCCTCGTCAAGGGAATTAATGAGGATCAATGGAACCACGAAAGCTCCTGTGATGAATTTTGCAGCTGAAACATCACTTGGTGTTGTTACTGTGAGAGCATTCAATATGGTAGAAAGATTTTTTAAAAACTACTTAAAGCTTGTGGACACAGACGCAACACTGTTTTTCCATTCAAATGTGGCCACGGAATGGTTACTTTTGAGGATTGAAGCACTTCAAAATTTGACAGTCATCACTTCAGCTTTGCTACTTGTTCTATTTCCTCAGGGATACGTGTCCTCGGGTCTTGTGGGACTATCTCTCTCTTACGCATTATCCTTGACATCTGGACATATATTTTGGACTCGAATGTATTGCAACTTATTAAACTATCTTATTTCTGTTGAAAGAATCAAGCAATTCATTCACCTACCATCACAACCTCCTGCTATTGTGAAGGACCACCAACCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAAATTAGATACCGTCCTAATGCTCCATTAGTGCTTAAGGGTATCAATTGCACGTTTAGAGAAGGGAGTAGAGTGGGAGTTGTAGGAAGAACAGGAAGTGGAAAGAGTACACTCATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAGCGGTGAGATTCTCATAGATGGGATTAACATATGC 3849 0.3998 MMMKEIFNGYADYFSWICLKNFDFTSFCSQRSTIDTINLIFLCVFYASIILNLIRRNFINESHTKTRFFLLVSICCAITSVVFYSIALWSLIAKTGNSMANHLSWLACLVRGFVWTSLAVSLLVQGHKWIKILNSVWWACSFALASALHIEILVRKHAIEIFDVLLWFLHTLLLFCAFQNLGYFVNQNELKSLSEPLLAREVDTEETGLGRASFLSKLTFSWVNSLLSLGYSRPLSLEDIPSLLSEDKADLSHKNFKHAWQSLARERSKNNTKNLVFWSIVRTHLKENILISVYALLRTIAVTVSPLILYAFVNFSNSRDSGETDLREGLTIVGFLILSKVVDSVSQRHWFFCTRRSGLKMRSALMVAVYEKQLKLSNSARTRHSTGEIVNYIAVDAYRMGEFPWWFHLTWACTLQLLLSISILYGVVGIGALPGVIPLLICGLLNVPFAKILQRCMAQFMISQDERLRATSEILNSMKIIKLQSWEDKFKSLVENLRAKEFIWLSKAQMLKAYGSFLYWMSPTIVSAVVXXGCAVFNSAPLNAGTIFTVLXTLXNLAEPVRMIPEAXSXLIQVKVSFDRLNTFLFDEELDSSDGSRSYKNRSSINAVEIQAGNFIWDHESVSPTLRDVNLEIKWGQKVAVCGPVGAGKSSLLYAILGEIPKISGTVNVFGNIAYVSQTSWIQSGTVRENILFGKPMEKTRYEXAIRVCALDKDINDFXHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFKDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVTESGKYENLLTTGTAFEQLVSAHRDAITELDQNNENRTHREESQGVYKNQSEEEISTEGQLGMQLTQEEEKEIGDVGLKTFWDYISFSRGSLRLFYIILAQCAFVALQTASTVWLALAIDIPKITSAFLVGVYSLISFSGAALIYIRSLLTAYLGLNASKDFFTSFNTAIFNAPMLFFDSTPVGRILTRASSDLSTLDFDIPYTITFVTCVPIEILVMIGAMVLVTWPVLIVAIPAIVASKYVQEYYQASSRELMRINGTTKAPVMNFAAETSLGVVTVRAFNMVERFFKNYLKLVDTDATLFFHSNVATEWLLLRIEALQNLTVITSALLLVLFPQGYVSSGLVGLSLSYALSLTSGHIFWTRMYCNLLNYLISVERIKQFIHLPSQPPAIVKDHQPPSSWPSKGRIDLQALEIRYRPNAPLVLKGINCTFREGSRVGVVGRTGSGKSTLISALFRLVEPASGEILIDGINIC 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0236 1283 ProSitePatterns ABC transporters family signature. 733 747 IPR017871 GO:0005524
Vra9g0236 1283 SMART AAA_5 635 808 IPR003593 -
Vra9g0236 1283 Gene3D - 1200 1283 IPR027417 -
Vra9g0236 1283 Gene3D ABC transporter type 1, transmembrane domain 256 589 IPR036640 GO:0005524|GO:0016021
Vra9g0236 1283 Gene3D ABC transporter type 1, transmembrane domain 869 1197 IPR036640 GO:0005524|GO:0016021
Vra9g0236 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 289 573 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0236 1283 Pfam ABC transporter transmembrane region 919 1162 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0236 1283 Pfam ABC transporter transmembrane region 291 552 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0236 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1159 1282 IPR027417 -
Vra9g0236 1283 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 67 1283 - -
Vra9g0236 1283 Gene3D - 615 863 IPR027417 -
Vra9g0236 1283 SUPERFAMILY ABC transporter transmembrane region 890 1198 IPR036640 GO:0005524|GO:0016021
Vra9g0236 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 830 IPR027417 -
Vra9g0236 1283 CDD ABC_6TM_ABCC_D2 906 1192 IPR044726 GO:0140359
Vra9g0236 1283 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 67 1283 - -
Vra9g0236 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 610 831 IPR003439 GO:0005524
Vra9g0236 1283 CDD ABCC_MRP_domain1 608 808 - -
Vra9g0236 1283 CDD ABC_6TM_ABCC_D1 290 581 IPR044746 GO:0140359
Vra9g0236 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 906 1166 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0236 1283 SUPERFAMILY ABC transporter transmembrane region 277 587 IPR036640 GO:0005524|GO:0016021
Vra9g0236 1283 Pfam ABC transporter 1234 1281 IPR003439 GO:0005524
Vra9g0236 1283 Pfam ABC transporter 626 760 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0236 Vra-Chr9 1700913 1705659 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0236 608 822 Calmodulin-binding Proteins AT2G36910 28.821 2.01e-21 99.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0236 9 1700913 1705659 Vra9g0236 9 1700913 1705659 ECH