Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0232 ATGGCTTTCAGAAGCACAATAGATAACTTCTCCTGCAATTGCCATGGAGATTTCAGTTTGGCTTCCTTTTCAAGTCAAAGGTGCATAATAGACATTGTCAACGTGTTTTTCCTGTGTGTCTTTTGTGTATCATTGCTCTCGAATCTGATCAAGAAAAGACCTGCAAATGCAAGTGGTGGTTTCAGAAAGAGATTGCTTCCTGTAGTTACTTCATTCTGTTGTACCCTTTTAAGCATTGCATATTTTTTTGATGGTTTTTGGAATCTCATAACCAAAACCACAGGCTTCAATCAGCTGAACTTGTTGGTTTGTATTGTGAGAGGACTGGTTTGGATATCTATAGCAGCTTCACTGTTTGTTCAAAGATTTCAATGGATAAAAAAACTATGCTCTATTTGGTGGGTGTTTTCATGCACATTGGTTTCAGTACTCAATGCTGAAATTCTGCTGAAAGGGCGTAGCTTTCAAATGTTTGATATGGCAATATGGGCAGTGCACATCCTAACTGTTCTCTGTGTCTTCCAAAGTCATGGCTACTTTGTCCCACAAGAAATCCCTGATGCCAGTTTATGTGAACCTCTGTTAGTTCATAAGGAAATGCATAAACAAACAGGACTTGGCCATGCCTCCTTTCTCAGCAGATTCACTTTCTCTTGGATGAATGCTTTGCTCAGTTTGGGTTACTCAAAGCCACTAGCAAGTGATGATATCCCTTCTCTTGATTCTGAAGATAAAGCTGATTTTGCATACCAAAAGTTTGCACATGCATGGCTTTCCCTTTTGAGAAGCAGTAACAATTCCAAAAACTTGGTCATGTGGTCCGTAGCCCGAGTTTACATGAAAGAAAATATCTCCATAGCCATTTGTGCATTTCTGAGGACAATTTGTGCTGTTGTTTCTCCTTTACTTGTTTATGTTTTTGTAAACTATTCCAGTTCCACTGAGGAAGACTTAAAACAAGGAATGGCCATAATGGGGTGTCTTATATTTGCCAAGGTGGTTGAGTCTGTGTCTCAAAGACATTGGTCTTTTAACTCAAGGAGGTTAGGAATGAAAATGAGATCTTCTTTAATGGCTGCAGTTTATCAAAAACAATTAAAACTCTCAGTTTTGGGTAGGAGAAGACATTCAACTGGTGAGATTGTTAATTACATTGCAGTTGATGCATATCGAATGGGCGAATTTCCATGGTGGTTTCATACTTTGTTGTTTTCTACACTGCAAATTTTTCTGGCTCTTGGTGTCCTTTTTGGTGTTGTGGGTATAGGTGCACTTCCTGGTTTAGTTCCACTTCTCATTTGTGGATTTCTCAACGTACCGTTTGCAAAGATCCTTCAAAAATATAGGTCGGAGTTTATGATTGCACAAGATGAGCGTCTGAGGTCAACTTCAGAGATTCTTAGTAGTATGAAAATCATAAAGCTACAGTCCTGGGAGGATAACTTCAAGAAGTTAGTTGAATCCCTTCGTGCTAAAGAGTTAAAATGTTTGGCTGAAGTACACTTCATGAGAGCTTGTGGAACATTTATATATTGGCTCTCTCCGACCATCGTTTCTTCAGTTATCTTAATGGGATGTGCGCTTTTTCAGAGTGCCCCTTTGGATGCTGGAACTATCTTCACAGTTCTTGCAACATTGAGAAGCATGGGAGAACCTGTCATATTGATTCCAGAAGCACTTTCTGTTATGATCCAAGTTATGGTCTCCTTTGATCGTCTCAACACCTTTTTGCTTGATGACGAGATAAAAGATGATGACATTGGAAGAACATCAAAAGATTCTTGCAGCAAGGGAGTTGAAATTCTAGCAGGCAGCTTCAGTTGGGATCTTCAATCATTGCCTCTTACTTTGAGAGAAGTGAATTTTGAGATCAAGTCGGAGCAGACAGTAGCAGTTTGTGGTCAAGTTGGAGCTGGAAAAACATCTCTCCTGTATGCAATACTCGGAGAGATACCCAAAATTTCAGGAACTGTTAGAGTAGAGGGAACACTTGCCTACGTTTCCCAAATTCCTTGGATCCAAAGTGGTACAGTTCGTGATAATATTCTATATGGAAAAGCAATGGACCAAACCAGGTATGAATATACCATTAAGGTCTGTGCCTTGGATAAGGATATTGATGGATTTAGCCACGGTGATCTGACAGAAATAGGTCAGAGAGGGATTAACTTGAGTGGTGGACAAAAGCAAAGGATTCAACTAGCTCGTGCAGTCTATAATGATGCTGATATCTATCTCCTAGATGACCCTTTTAGTGCTGTAGATGTTCATACTGCCTCTATTCTGTTTCATGATTGTGTCAGGACTGCTTTAAGAAGGAAAACAGTTATTCTTGTGACTCATCAAGTTGAATTTCTCTCAGAAGTTGATAAAATCCTGGTAATGGAAGGAGGAAAAATTAGTCAAACGGGTAGCTATGAAGATCTGTTGACTGCTGGAACAGCCTTTGAACAGCTTCTGAGTGCTCATAGAGAGGCAATTACAGGAATAGAAACAAACAGTGCAAGCAAAAGAGAAGTTCAAAATGTGGTTACAGTTCAGCCTGAGGATTCTCATATTTCTAATCTCACTAAATGTGGAAGTGATGGAGAAATTTCTACCGAGATTCAACTTACACGAGAGGAAGAAAAGGAGAGTGGTGATGTTGGGTGGCAGCCATTCTGTGACTACATTTTGTTCCCTAAGGGATTTTTGCTTCTATGTTTGAGCATATTAGCACAGTTGACTTTTGTAGGTTTGCAGGCTGCATCAACTTCTTGGCTTGCTATTGCCAATGAGATGTCAAAAGTAACTAGCAGCATCTTAGTTGGAGTTTATAGTGTGATTACCATTTTAAGCATTGTTTTTGTATATCTGAGATCTTACTTTGCTGCACATCTTGGTCTAAAAGCTTCTAAAGCATTCTTCTCTGCCTTCACTGATTCTATCTTTAATGCTCCTATGTTGTTCTTTGATTCAACCCCAGTAGGGAGGATTTTTACCCGAGCTTCATCAGATTTGAGTATTTTAGATTTCGATATACCTTTTTCCACCATCTTTGTGATAGCTGAAGTAACAGAGCTTCTTACAATGATTGTGATAATGGTTTCGGTCACATGGCAAGTGTTCATTGTTGCAATTCTTGCCATGGTGGCTACAAAATATATCCAGGGCTATTATCAAGCTTCTGCAAGAGAAATTATACGAATCAATGGAACTACAAAAGCCCCTCTTATGAATTTTACGTCTGAGTCATATCTTGGTGTGGTTACTATAAGAGCTTTCAACATGGCTGAAAGATTTTTCAAGAACTACCTTAACCTTGTTGACACAGATGCCACGATGTTCTTTCATTCCAATGCTGCCATCGAATGGTTAATTCTAAGGATTCAAGCACTTCAGAATTTGACAGTCTTCACTGCAGCTTTGCTGCTTGTTCTACTTCCAAAGGGATATGTGGCCCCTGGCCTTGTGGGACTTTCTCTGTCTTACGGTTTTTCACTGACAGGAACCGTAGTTTATCTGACTAGAATGTTTTGCAACTTATCGAACTATGTGATCTCTGTTGAAAGAATCAAGCAATTCATTCACATACCAGCAGAACCTAGTGCAATTGTAGAGGACAATAGACCACCACCTTCTTGGCCTTCTAAAGGTCGAATAGATCTTCAATCTCTAGAGATCAGATATCGTCCAAATTCTCCATTAGTTCTGAAGGGCATCTCTTGCACGTTCCAAGAAGGGAGTAGAGTTGGAGTTGTGGGAAGAACAGGAAGTGGAAAAACTACACTTATAAGTGCTTTGTTTCGCATAGTTGAGCCTACTAGAGGAGACATTCTTATAGATGGGATTAATATATGCTCAATTGGGCTAAAAGATTTAAGAATAAAGCTTAGCATCATTCCTCAAGAACCAACTCTTTTCAAGGGTAGCATTCGAAAAAACTTGGATCCTCTAGGCCTGTACTCAGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTCAAGACAACAATTAGTAGTCTACCATATCTCCTGGATACTTCTGTGAGTGATGAAGGGGAAAACTGGAGTGTGGGGCAGCGCCAACTCATGTGTCTTGGAAGGGTACTTCTCAGGAAGAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGATTCTGCCACAGATGGTGTTCTACAACGAATCATCAGACAAGAATTTTCAGAATGCACAGTTATAACTGTGGCTCACAGAGTTCCCTCTGTGATAGACAGTGACATGATCATGGTCCTATCTTATGGGAAACTGGTGGAGTACGACAAACCTTCAAAGCTTATGGATACTAACTCTTCCTTCTCTAAGCTGGTAGCTGAATATTGGTCTCACTCCAAAATGGGTAATGATATATAG 4380 0.3979 MAFRSTIDNFSCNCHGDFSLASFSSQRCIIDIVNVFFLCVFCVSLLSNLIKKRPANASGGFRKRLLPVVTSFCCTLLSIAYFFDGFWNLITKTTGFNQLNLLVCIVRGLVWISIAASLFVQRFQWIKKLCSIWWVFSCTLVSVLNAEILLKGRSFQMFDMAIWAVHILTVLCVFQSHGYFVPQEIPDASLCEPLLVHKEMHKQTGLGHASFLSRFTFSWMNALLSLGYSKPLASDDIPSLDSEDKADFAYQKFAHAWLSLLRSSNNSKNLVMWSVARVYMKENISIAICAFLRTICAVVSPLLVYVFVNYSSSTEEDLKQGMAIMGCLIFAKVVESVSQRHWSFNSRRLGMKMRSSLMAAVYQKQLKLSVLGRRRHSTGEIVNYIAVDAYRMGEFPWWFHTLLFSTLQIFLALGVLFGVVGIGALPGLVPLLICGFLNVPFAKILQKYRSEFMIAQDERLRSTSEILSSMKIIKLQSWEDNFKKLVESLRAKELKCLAEVHFMRACGTFIYWLSPTIVSSVILMGCALFQSAPLDAGTIFTVLATLRSMGEPVILIPEALSVMIQVMVSFDRLNTFLLDDEIKDDDIGRTSKDSCSKGVEILAGSFSWDLQSLPLTLREVNFEIKSEQTVAVCGQVGAGKTSLLYAILGEIPKISGTVRVEGTLAYVSQIPWIQSGTVRDNILYGKAMDQTRYEYTIKVCALDKDIDGFSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDVHTASILFHDCVRTALRRKTVILVTHQVEFLSEVDKILVMEGGKISQTGSYEDLLTAGTAFEQLLSAHREAITGIETNSASKREVQNVVTVQPEDSHISNLTKCGSDGEISTEIQLTREEEKESGDVGWQPFCDYILFPKGFLLLCLSILAQLTFVGLQAASTSWLAIANEMSKVTSSILVGVYSVITILSIVFVYLRSYFAAHLGLKASKAFFSAFTDSIFNAPMLFFDSTPVGRIFTRASSDLSILDFDIPFSTIFVIAEVTELLTMIVIMVSVTWQVFIVAILAMVATKYIQGYYQASAREIIRINGTTKAPLMNFTSESYLGVVTIRAFNMAERFFKNYLNLVDTDATMFFHSNAAIEWLILRIQALQNLTVFTAALLLVLLPKGYVAPGLVGLSLSYGFSLTGTVVYLTRMFCNLSNYVISVERIKQFIHIPAEPSAIVEDNRPPPSWPSKGRIDLQSLEIRYRPNSPLVLKGISCTFQEGSRVGVVGRTGSGKTTLISALFRIVEPTRGDILIDGINICSIGLKDLRIKLSIIPQEPTLFKGSIRKNLDPLGLYSDDEIWKALEKCQLKTTISSLPYLLDTSVSDEGENWSVGQRQLMCLGRVLLRKNRILVLDEATASIDSATDGVLQRIIRQEFSECTVITVAHRVPSVIDSDMIMVLSYGKLVEYDKPSKLMDTNSSFSKLVAEYWSHSKMGNDI* 1460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0232 1459 Gene3D - 1197 1448 IPR027417 -
Vra9g0232 1459 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 50 1451 - -
Vra9g0232 1459 SUPERFAMILY ABC transporter transmembrane region 892 1194 IPR036640 GO:0005524|GO:0016021
Vra9g0232 1459 Gene3D ABC transporter type 1, transmembrane domain 271 576 IPR036640 GO:0005524|GO:0016021
Vra9g0232 1459 CDD ABCC_MRP_domain1 599 799 - -
Vra9g0232 1459 CDD ABC_6TM_ABCC_D2 896 1189 IPR044726 GO:0140359
Vra9g0232 1459 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 896 1177 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0232 1459 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 582 822 IPR003439 GO:0005524
Vra9g0232 1459 Pfam ABC transporter 1231 1379 IPR003439 GO:0005524
Vra9g0232 1459 Pfam ABC transporter 617 751 IPR003439 GO:0005524
Vra9g0232 1459 Pfam ABC transporter transmembrane region 286 545 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0232 1459 Pfam ABC transporter transmembrane region 898 1141 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0232 1459 Gene3D - 577 846 IPR027417 -
Vra9g0232 1459 Gene3D ABC transporter type 1, transmembrane domain 867 1195 IPR036640 GO:0005524|GO:0016021
Vra9g0232 1459 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1216 1448 IPR003439 GO:0005524
Vra9g0232 1459 SMART AAA_5 1240 1433 IPR003593 -
Vra9g0232 1459 SMART AAA_5 626 799 IPR003593 -
Vra9g0232 1459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1203 1447 IPR027417 -
Vra9g0232 1459 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 286 565 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0232 1459 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 50 1451 - -
Vra9g0232 1459 CDD ABCC_MRP_domain2 1212 1432 - -
Vra9g0232 1459 CDD ABC_6TM_ABCC_D1 286 573 IPR044746 GO:0140359
Vra9g0232 1459 Coils Coil 475 495 - -
Vra9g0232 1459 ProSitePatterns ABC transporters family signature. 724 738 IPR017871 GO:0005524
Vra9g0232 1459 SUPERFAMILY ABC transporter transmembrane region 272 581 IPR036640 GO:0005524|GO:0016021
Vra9g0232 1459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 821 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0232 Vra-Chr9 1678156 1683904 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0232 593 845 Calmodulin-binding Proteins AT2G36910 27.473 3.71e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0232 - - gmx:100813711 2424.82