Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0231 ATGTTAGGCACAGTAGATTTTATTTTTAGCGACATGGCACAGGTTGTATTACAAAACTGTGATATTCAAGTGATAATTCCTCTCACAAGCCAGCAGAACGTCATAACCGCACAAGGAAGAACGAATAACGAAGATGGTGGAATTGTAATCCAAAATTGTAGGATTGGTACCACTCACGAGTTTGAAGGCGTCAAAAAGAAATTCCAAACATATTTAGAGAGACCATGTAAGAATTATTCGAGAACTATCATCATGGAAAGTTATATGCGTGATATAATTGACTCAGCTGGTTGGTTAGAGTGGGAAGGCACTACTTCTGGTCTTAACACTCTATTCTATAGAGAGTATAACTTTGGACTTGGTGCTCAAACCTCCAATAGAGTCACATGGAAGGGATTCAAGGTGATCACTCATTCTGCTGAGGTCGAGCCTTTTACTGTCAGAAACTTCATTAATGACTCCCAATGGTTGAATTCTACTGGATTTCCTTATAAACTAGACTTGTAA 507 0.3846 MLGTVDFIFSDMAQVVLQNCDIQVIIPLTSQQNVITAQGRTNNEDGGIVIQNCRIGTTHEFEGVKKKFQTYLERPCKNYSRTIIMESYMRDIIDSAGWLEWEGTTSGLNTLFYREYNFGLGAQTSNRVTWKGFKVITHSAEVEPFTVRNFINDSQWLNSTGFPYKLDL* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0231 168 Pfam Pectinesterase 2 153 IPR000070 GO:0030599|GO:0042545
Vra9g0231 168 Gene3D - 1 168 IPR012334 -
Vra9g0231 168 PANTHER PECTINESTERASE 2 167 - -
Vra9g0231 168 PANTHER PECTINESTERASE 2 167 - -
Vra9g0231 168 SUPERFAMILY Pectin lyase-like 3 166 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0231 Vra-Chr9 1669443 1675562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0231 1 168 Carbohydrate Esterase AT3G14310 55.882 2.74e-57 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0231 K01051 - gmx:100777646 192.2