Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0223 TGTAAAAGCTGGGTTTGGTCCTCTGTTTTATCTCTAACATTGAACACTCTTGAACAATTATTAAGGTTTCTAATCTTTTTCTGGCAGCAGTTTGTCTACAAGTGTGAACTGGTGACAAGGATCAGTTTCTCCTCCAAGTTTCAACTAGATTTTTTCTTGAAGCAAACATCTATGGATGGTTTGAGTTGGGATACCTCTCAACTTGAAGCAAACACACCAATCCTGTGGAGTACTATTCAGCCACCACCAGATTTTGAAGGAGGCTACTCCATGCCCAATGTTGTCAATCAAATACAAGATTTGCAGAAGGCTCAAACAGGTCATGCAGATTCAAATTCTGAAAGAGTGATTTATCAGTCAGCAGATGCTACCACCGCTTCTTCAGAGATAATGGATGAGATGCAAAGGCAAAACACAAATCTTTTACAGCATGCACCAACAATGATGCCGGTGAAATCAGGAACTGGAGCCAGTTGGGGAGAAGCTTTCACATCTCAATCATACCCGTCTCTGTCGGTCAATGGATCTCAAAGGATGAACCTGATTAGCAACTACATGCCAGATTTCAGCATGGCCCACCAACAACAGCAGCAACAACAACTTGTCAATGGCTCACAAAATGGGAAGGGTGCTTGCTCTCTTGAGTCTTTTGACTGCTTGATTTCAGCTACCAATAGTAACACAGACACATCTGTTGAAGATGATGGCATCTCGATGATTTTATCTGACTGTAGAAACTTGTGGAACTTCAGCTACGGCAGTGCAGCTTCCACTGGTGAATCTGAGAGTAATGCATCGAATGGTAGAAAGGAAGACATGAAGTGTCCGGTGAATGAAGTTGATGAAACAGTTTCTCAAAGCTCCTTGGATCGAGGAAAAACAGTACAATCAAAGGCTAATTGTTCAAAGAGGAGCCATGAGGAAACTAAAACGATCAAAGTTGGTGCCACTGGCCGTGGTTCCTGCTTCAGTATTGTGCAGAATTCTTCTTCTGTTGAGCAAGGTGGATTCAGACTTATCTCAGATGATCCATCAAAAAGCAAGAAACCCAGATGGGAGAAGAGTTCCTCTTCAAATAACATCAATTTCCAGCAACCGAATTCATCCATGTCATCATCCATTGAGGAACCTGATCCAGAGGCCATTGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCTGTGAACTTTGGCTTGGATGCTGCTGAAAAACCAAAGAGGAAGAATGTGAGAATATCAACTGATCCACAAACTGTGGCTGCAAGGCATAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGCTTGTGCCTGGGGGAAGCAAAATGGACACAGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAGTTTCTCAGGTCACAGGTTAAGGCACTGGAATGCCTAGGAAACAAAGTTGATGCAATGAATTGTCCTCCTACAAGCATTGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACATCTCTCAGTCAAATCCATCATTCCCAGGGTTGA 1533 0.4292 CKSWVWSSVLSLTLNTLEQLLRFLIFFWQQFVYKCELVTRISFSSKFQLDFFLKQTSMDGLSWDTSQLEANTPILWSTIQPPPDFEGGYSMPNVVNQIQDLQKAQTGHADSNSERVIYQSADATTASSEIMDEMQRQNTNLLQHAPTMMPVKSGTGASWGEAFTSQSYPSLSVNGSQRMNLISNYMPDFSMAHQQQQQQQLVNGSQNGKGACSLESFDCLISATNSNTDTSVEDDGISMILSDCRNLWNFSYGSAASTGESESNASNGRKEDMKCPVNEVDETVSQSSLDRGKTVQSKANCSKRSHEETKTIKVGATGRGSCFSIVQNSSSVEQGGFRLISDDPSKSKKPRWEKSSSSNNINFQQPNSSMSSSIEEPDPEAIAQMKEMIYRAAAFRPVNFGLDAAEKPKRKNVRISTDPQTVAARHRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALECLGNKVDAMNCPPTSIAFSFNPSFPMQTSLSQIHHSQG* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0223 510 Gene3D - 420 474 IPR036638 GO:0046983
Vra9g0223 510 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 415 464 IPR011598 GO:0046983
Vra9g0223 510 SMART finulus 421 470 IPR011598 GO:0046983
Vra9g0223 510 Pfam Helix-loop-helix DNA-binding domain 425 464 IPR011598 GO:0046983
Vra9g0223 510 MobiDBLite consensus disorder prediction 256 275 - -
Vra9g0223 510 MobiDBLite consensus disorder prediction 335 377 - -
Vra9g0223 510 MobiDBLite consensus disorder prediction 282 309 - -
Vra9g0223 510 MobiDBLite consensus disorder prediction 282 299 - -
Vra9g0223 510 PANTHER TRANSCRIPTION FACTOR BHLH87 114 506 - -
Vra9g0223 510 MobiDBLite consensus disorder prediction 354 375 - -
Vra9g0223 510 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 114 506 IPR045843 GO:0003700|GO:0006355
Vra9g0223 510 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 420 474 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0223 Vra-Chr9 1590427 1592254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0223 154 509 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 48.396 2.24e-89 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra9g0223 HLH 3.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0223 - - vra:106773034 979.548