Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0191 ATGGGAAAAGCTAGCAGGTGGTTCAAGGGTTTGTTGGGGATGAAGAAGGAGAAGGATCACAGCGACAATTCAGGCTCGCTGGCTCCCGACAAGAAGGAGAAGAAAAGGTGGAGTTTTGCCAAGCAAGGGAAGGATGTGCCATCTTCGGTTCCTGCCACTGATAACACCTGGCTCAGATCCTACATTGCTGATACAGAGAATGAGCAGAATAAACATGCAATTGCCGTTGCCGCTGCCACTGCCGCCGCCGCCGATGCTGCCGTGGCTGCCGCTCAGGCTGCCGTGGCGGTTGTGAGGCTGACAAGCCAGGGCAGAGGTGCATTGTTCAGTGGAAGCAGGGAGAAGTGGGCTGCCGTGAAGATCCAAACTTTTTTTAGAGGCTACTTGGCACGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAGGCTCTTGTTAGAGGGTACTTGGTTAGAAAGAGGGCTGCTGCAACTCTTCACAGTATGCAAGCTCTAATAAGAGCTCAAACTGCTGTCAGATCACAGCGAGCTCGTCGTTCCTTGAGCAAAGAAAGCAGATTTCTACCTGAAGTTCTTGCAAGAAAATCTGTGGAACGATTTGATGAAACAAGGAGTGAATCACACAGTAAAAGGCTACCTACATCCTACGAAACATCCTTGAATGCTTTTGATGAGAGCCCCAAGATTGTTGAAATTGACACATACAAGACTCGATCAAGGTCTAGGCGCTTTACCTCTACAATGTCTGAGTGTGGAGAAGACATGTCCTGTCAGGCAATGTCATCCCCTCTACCTTGTCATGTCCCTGGTCGAATCTCGGTTCCTGATTGCAGACACCTTCAAGATTTTGATTGGTACTTCAACGTTGATGAGTGTAGATTCTCCACTGCTCATAGCACACCACGTTTCACAAACTACGCCCGTCCCAATGCTCCAGCCACACCAGCCAAGAGTGTTTGTGGAGACACCTTCTTCAGACCTTGTTCCAATTTCCCGAACTACATGGCCAATACTCAGTCATTCAAGGCAAAACTAAGGTCTCACAGTGCTCCAAAACAAAGACCTGAACCCAAGAAAAGGCTCTCACTCAATGAAGTGATGGCAGCAAGAAACAGCATAAGCAGTGTTAGAATGCAAAGGCCATCATCCAATTTCTTCCAGACTCAAGACTCCTGGAATTTTTGA 1188 0.4806 MGKASRWFKGLLGMKKEKDHSDNSGSLAPDKKEKKRWSFAKQGKDVPSSVPATDNTWLRSYIADTENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGALFSGSREKWAAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALIRAQTAVRSQRARRSLSKESRFLPEVLARKSVERFDETRSESHSKRLPTSYETSLNAFDESPKIVEIDTYKTRSRSRRFTSTMSECGEDMSCQAMSSPLPCHVPGRISVPDCRHLQDFDWYFNVDECRFSTAHSTPRFTNYARPNAPATPAKSVCGDTFFRPCSNFPNYMANTQSFKAKLRSHSAPKQRPEPKKRLSLNEVMAARNSISSVRMQRPSSNFFQTQDSWNF* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0191 395 MobiDBLite consensus disorder prediction 10 41 - -
Vra9g0191 395 MobiDBLite consensus disorder prediction 1 51 - -
Vra9g0191 395 ProSiteProfiles IQ motif profile. 138 165 IPR000048 GO:0005515
Vra9g0191 395 Pfam Protein of unknown function (DUF4005) 302 376 IPR025064 -
Vra9g0191 395 PANTHER PROTEIN IQ-DOMAIN 14-LIKE 1 385 - -
Vra9g0191 395 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Vra9g0191 395 SMART iq_5 113 135 IPR000048 GO:0005515
Vra9g0191 395 SMART iq_5 136 157 IPR000048 GO:0005515
Vra9g0191 395 Gene3D - 56 140 - -
Vra9g0191 395 Pfam IQ calmodulin-binding motif 141 155 IPR000048 GO:0005515
Vra9g0191 395 Pfam IQ calmodulin-binding motif 116 135 IPR000048 GO:0005515
Vra9g0191 395 PANTHER IQ-DOMAIN 5-RELATED 1 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0191 Vra-Chr9 1338235 1341021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0191 1 379 IQD Protein Family AT3G16490 56.743 1.68e-116 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0191 - - gmx:100797686 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0191 9 1338235 1341021 Vra9g0191 9 1338235 1341021 ECH
Vra5g2487 5 31841937 31843833 Vra9g0191 9 1338235 1341021 PCT