Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0188 ATGTGGCAAAGAAGCCACGGGTCTTCGGAGGAGAGGAAACTGGAGCTTAGGCTTGGTCCACCTAGTGAAGATTCTCTCAATGAAAGCATCAAAAAATGCATCACAGAAAGAAACGAATCACCACTTTCTCTTGGTTACTTCTCAACTCACGAAATTTCCGCTTCTGACAAACCAGGTCCAGGTGGGGCTATGGTGCCCACTGCATGGAGTTCCGCATCTTACCACCAACACCAAGCTAAACCATCATTTTTTCAACTCCAATCAAGGCCACAAAACGTGTTAATGATGAGAAAGGAAGTGCCACAACTTTGTTGTGTAGAGAACAAGGCATTCTCACACTCTTCTGCAGATGCAGCCGTGTCCACAAGAACTGCTTCGGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCTCTTCAAAGCTGCATACTGGGTCCCAACAATATCAACACTTTGTTCCAGACAACGTTGCTATCCAAAAACCTACTCACAACTGTGGCAAAGGCTTGTTTGTGAAGATCAATATGGATGGTGTTCCTATAGGAAGAAAACTGAACATCAATGCTTATGACAGCTATGAAAAACTTTCCTCTGGTGTTGATGAGCTCTTTAGAGGCCTACTCGCAGAGATGAAGTTATCTCATATTGCCTCTTCCCACTGTTGTTCTGCACAAAGAGATTCCTGTGCTGGTGGAATTCAAAACAAGGGAGAGGAAGAGAAAGAGAAAGCCAATACAAGTTTTCTGGTTGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAAAATGCTTGTTGGAGATGTACCTTGGCACATGTTTGTGTCGACAGTGAAGAGGCTGAGGGTGTTGAGAAGTTCTGATCTTCCTGCATTTACACTTAGTAGTAAGCAAGACTAG 933 0.4405 MWQRSHGSSEERKLELRLGPPSEDSLNESIKKCITERNESPLSLGYFSTHEISASDKPGPGGAMVPTAWSSASYHQHQAKPSFFQLQSRPQNVLMMRKEVPQLCCVENKAFSHSSADAAVSTRTASGPVVGWPPIRSFRKNIASGSSSKLHTGSQQYQHFVPDNVAIQKPTHNCGKGLFVKINMDGVPIGRKLNINAYDSYEKLSSGVDELFRGLLAEMKLSHIASSHCCSAQRDSCAGGIQNKGEEEKEKANTSFLVGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVLRSSDLPAFTLSSKQD* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0188 310 MobiDBLite consensus disorder prediction 1 19 - -
Vra9g0188 310 SUPERFAMILY CAD & PB1 domains 172 294 - -
Vra9g0188 310 MobiDBLite consensus disorder prediction 1 26 - -
Vra9g0188 310 Gene3D - 173 308 - -
Vra9g0188 310 ProSiteProfiles PB1 domain profile. 177 302 IPR000270 GO:0005515
Vra9g0188 310 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 3 309 - -
Vra9g0188 310 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 309 IPR003311 GO:0005634|GO:0006355
Vra9g0188 310 Pfam AUX/IAA family 14 300 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0188 Vra-Chr9 1312382 1315552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0188 189 305 B3 DNA Binding Superfamily AT5G20730 23.932 9.60e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra9g0188 AUX_IAA 1.6e-62 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0188 K14484 - gmx:100793822 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0188 9 1312382 1315552 Vra5g2486 5 31825578 31829463 ECH
Vra9g0188 9 1312382 1315552 Vra9g0188 9 1312382 1315552 ECH
Vra5g2486 5 31825578 31829463 Vra9g0188 9 1312382 1315552 PCT