Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0187 ATGATGACTTTCGGGAGAAAACCCCATTTGGGGTTGCTTCTCTTTCTTCTCCACCTTCACTTCAGCACCTGTTACTCCACAGAACCTATGAACTGTACGGACACAGGCCGCGTTTGCACTTCTTTCATTGCTTTCAAGCCTGAGCCAAACCAAACGCTTGCTCTGATTCAGAGCATGTTTGATGTGTTGCCTGGTGACATCACAGTTGAAGGCAATGGATGGGGTTATGTGTTCATAAGGAAGAATTGTTCTTGTGCTGCGGGTATCAAAAAATACTTGTCCAATACCACGTTCACTGTGAAGTCCAATGAGGGGTTGGTGTATGACGTGGTGATGAGTGCCTATGATGGCCTTGCTGTCCTTCCCAACACAACCAGGAGGGCCAGGAACGGTGCTGTTGTGTCTCTGAGGTTGTTTTGTGGCTGCTCCAGTGGACTGTGGAACTATTTGGTCAGTTATGTGATGAGAGACGGGGATAGTATTGAGTCCTTGGCAAGCAGGTTTGGGGTTAGCATGGATAGCATTGAGAGTGTGAATGGCATTAGTAATCTGGATAATGTCACAGTTGGTTCACTTTATTACATACCACTTGATTCTGTTCCTGGTGATCCTTATCCCCTGAATAATGCTGCTCCACCAGTTCCTGTTCCTGCTCCATCCTTTGATAATTTTTCAGCTGATCAAGTTGACCACAAGGCTCATGTACCCTACGTATGGATCATTGGGGGCTTAGGAGTTGGTCTAATTCTAATTGTCTTAACTGTGATTCTCTGTGTTTGTATGAGATCATCAAATTGTTTTGCTGATGATGCCAGAACTCATGAGAAAGATGCTGAGGGCAAAATTTCTCATAAATTCCATATTCTGAGGAACCCAAGTTTTTTTTGTGGTTCTGGAAGGTACATATGTGGCAAGCATGTTGAACAGAAGCAAACAGATGCTGAATCCAGCAATCACACGATAACCATTCCAAAAGCCTCAACTCTTGGGCCTGAAGTATTTGAAATGGACAAGCCTGTTGTCTTTACATATGAAGAGATTTTCTCCACATCTGATGGTTTCTCTGACTCAAATCTACTTGGTCATGGAACATACGGTTCTGTTTATTATAGCCTCCTTCGTGATCAGGAAGTTGCTATTAAAAGAATGACTGCTACTAAAACAAAAGAATTTTTGTCAGAGATGAAAGTTTTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGCTATGCAGCTAGTCACGAGGAGCTTTTCTTAGTTTATGAATATGCTCAGAAGGGTTCACTTAGAAGCCATTTGCATGATCCTCAAAGTCATTCCCCACTTTCTTGGATCATGAGGGTGCAAATTGCGCTTGATGCTGCCAGGGGCCTTGAATACATACACGAGCACACCAAAACTCATTATGTACACCGTGATATCAAGACCAGTAACATATTACTTGATGCTTCCTTTAGAGCAAAGATTTCAGATTTTGGGTTAGCAAAACTTGTTGGGAAAGCAAACGAGGGAGAAATTTCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCCCCAGAATATTTGAGTGAGGGTCTTGCGACAACTAAAAGTGATGTCTATGCATTTGGTGTTGTCCTTTTTGAGATTATATCAGGAAAGGAGGCCATCATTCGATCAGAAGGCACAACAACAAAAAATCCTGAAAGACGTTCATTGGCATCTATAATGCTGGGTGTTCTCAGGAATTCACCTGACTCCATGAGCATGTCAAGCTTGAGAGATTATATTGATCCAAATATGATGGATTTGTATCCCCATGATTGTGTATTTAAGCTGGCTACACTGGCAAAGCAATGTGTGGATGAGGACCCCATCTTACGACCTGATATGAGACAAGTAGTGATTTCCCTCTCACAGATTCTTCTGTCTTCTGTTGAATGGGAAGCAACTCTTGCTGGAAATAGCCAGGTTTTCAGTGGCCTTGTTCAGGGAAGATAG 1989 0.4248 MMTFGRKPHLGLLLFLLHLHFSTCYSTEPMNCTDTGRVCTSFIAFKPEPNQTLALIQSMFDVLPGDITVEGNGWGYVFIRKNCSCAAGIKKYLSNTTFTVKSNEGLVYDVVMSAYDGLAVLPNTTRRARNGAVVSLRLFCGCSSGLWNYLVSYVMRDGDSIESLASRFGVSMDSIESVNGISNLDNVTVGSLYYIPLDSVPGDPYPLNNAAPPVPVPAPSFDNFSADQVDHKAHVPYVWIIGGLGVGLILIVLTVILCVCMRSSNCFADDARTHEKDAEGKISHKFHILRNPSFFCGSGRYICGKHVEQKQTDAESSNHTITIPKASTLGPEVFEMDKPVVFTYEEIFSTSDGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFLSEMKVLCKVHHANLVELIGYAASHEELFLVYEYAQKGSLRSHLHDPQSHSPLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKANEGEISTTKVVGTYGYLAPEYLSEGLATTKSDVYAFGVVLFEIISGKEAIIRSEGTTTKNPERRSLASIMLGVLRNSPDSMSMSSLRDYIDPNMMDLYPHDCVFKLATLAKQCVDEDPILRPDMRQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0187 662 SUPERFAMILY LysM domain 151 196 IPR036779 -
Vra9g0187 662 Gene3D LysM domain 148 201 IPR036779 -
Vra9g0187 662 SMART serkin_6 354 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0187 662 ProSitePatterns Protein kinases ATP-binding region signature. 360 381 IPR017441 GO:0005524
Vra9g0187 662 ProSiteProfiles Protein kinase domain profile. 354 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0187 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Vra9g0187 662 SMART LysM_2 152 196 IPR018392 -
Vra9g0187 662 ProSiteProfiles LysM domain profile. 151 195 IPR018392 -
Vra9g0187 662 Pfam LysM domain 153 190 IPR018392 -
Vra9g0187 662 SUPERFAMILY Protein kinase-like (PK-like) 332 634 IPR011009 -
Vra9g0187 662 Gene3D Transferase(Phosphotransferase) domain 1 427 649 - -
Vra9g0187 662 CDD LysM 151 195 IPR018392 -
Vra9g0187 662 Gene3D Phosphorylase Kinase; domain 1 328 425 - -
Vra9g0187 662 PANTHER BNAA06G02020D PROTEIN 30 662 - -
Vra9g0187 662 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 30 662 IPR044812 GO:0019199|GO:0045087
Vra9g0187 662 Pfam Protein tyrosine and serine/threonine kinase 358 632 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0187 Vra-Chr9 1300962 1307720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0187 28 662 Receptor kinase-like Gene Family AT1G51940 69.457 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vra9g0187 PK_Tyr_Ser-Thr 1.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0187 - - gmx:100796989 1186.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0187 9 1300962 1307720 Vra9g0187 9 1300962 1307720 ECH
Vra5g2484 5 31802521 31807645 Vra9g0187 9 1300962 1307720 PCT