Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0179 ATGCCGGTGTTGCGTAACGGAGCGAACAGGGGCCGGGGAGCAGCGAAACAACAGGAGCGGCTGCAGAGTCCAGCAGTGGAAGGGGAGGCGATTGCGACAAGGACCCGGAGGCGGCGTGCAGCGGCAGCGGCGGCAGCTGTGCCGAAGACTAACAACAGCAACGAAAATAATAAGCATAAGCAACAACAACAGCACCCGCCGGTGCAGGCGGTGGTGGTAAATGAGCACGTAGTTGTTGCTGCGAAGGAAGAAGAGAATCGGGGATTGGGGGAAGGTGTTGGTGCGGCTGGAGCGGAGAGGGAAGAGGTAGCCGAGAAAGAGATGGTTGGACATGACAGCGGAGGTCGGAGCAATGACAAGGCCAATGCCGGTGGTGAAGATGATGCCAATACTCCCGAGGTTCCTCAGAAGATCCAAGTAGGTAATTCCCCTTGTTATAAAGTAGAAAGAAAACTTGGCAAGGGTGGATTTGGTCAGGTATATGTTGGACGACGCTGTAGTGGAAATTTGAATGAGAGAACTGGACCTGGGGCTGTGGAGGTTGCATTAAAACTTGAGCATAGAACTAGTAAGGGGTGTACCTATGGACCACCCTATGAGTGGCAAGTATACAACACTCTCGGTGGCAGTCATGGTGTCCCACAAGTACACTACAAGGGCAGGCAGGGCGATTACTATGTCATGGTTATGGATATACTGGGACCTAGTCTGTGGGATGTTTGGAATAATAATAACTCTCATGCCATGTCCACTGAAATGGTTGCTTGTATTGCAATTGAAGCAATATCTATATTGGAAAAAATGCACTCTCGAGGATATGTGCACGGGGATGTGAAGCCTGAAAATTTTCTGCTTGGTCCTCCTGGGACGTCTGATGAGAAAAAATTGTTCCTCGTAGATCTTGGATTAGCTACTAAGTGGAGGGATAGTGCAACAGGCTCACATGTGGAATATGATCAAAGACCAGATGTGTTTAGAGGCACAGTCCGCTATGCTAGTGTTCATGCACATTTAGGGAGAACTGCAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACATTGATTTTTCTCCTCCGAGGTCGCCTTCCTTGGCAGGGATTTCAGGGAGAAAACAAAGGTTTTCTGGTTTGCAAGAAGAAGATGGGAACATCTCCAGAGATTATTTGCTGCTTTTGTCCTCAACCTTTTAAGCAGTTTGTTGAACATGTTGTGAACTTAAAGTTTGATGAAGAACCCAATTATGCAAAATATATTTCTCTATTTGATGGAATTGTCGGTCCTAACCCAGATATTAGACCAATTAATACAGAAGGTGCACAAAAGCTCATTGGCCATAAGAGAGGCCGGTTAGCAATGGAAGAAGAGGACGATGACCAGCCAAAAAAGAAGACTCGTATTGGTTTGCCAGCATCACAGTGGATTAGTGTTTACAATGCTCGTAGACCAATGAAACAAAGATATCACTATAATGTATCAGATGCAAGGTTATCCCAGCACATTGAGAAAGGAAATGAGGATGGCTTATATATTAGCAGTGTTGCTTCATGTCAGAGCGTATGGGCATTAATCATGGATGCGGGAACAGGTTTCGCTGGCCAAGTTTACGAACTGTCACCCTTTTTCCTCCATAAGGAATGGATCGTGGAGCAATGGGAACTAGGTTACTACATCAGCGCAATTGCTGGAGCTGCAAATGGGAGCTCGCTAGTAGTAATGTCCAAGGGTACACAGTTTGTGCAGCAATCATACAAAGTCAGTGATTCATTTCCTTTTAAGTGGATTAACAAAAAATGGAGGGAGGGATTTTACGTGACTTCAATGGCCACCTCAGGGCCGAGATGGGGAGTCGTGATGTCTCGTGGTGCAGGATATTCAGATCAGGTGATTGAACTAGACTTTCTGTATCCTAGTGAGGGGATTCACAAGCGGTGGGATAGCGGTTACAGAATCACATCTACTGCTGCAACTTGGGACCAAGCTGCTTTTGTCCTTAGTGTACCAAGGAGGAAACCTTTAGATGAAACTCAGGAAACACTTAGGACTTCTGCTTTTCCTAGTACACATGTCAAGGAGAAGTGGGCTAAGAACCTCTACATTGCTTCTATATGCTATGGACGTACAGTTTCTTGA 2133 0.4632 MPVLRNGANRGRGAAKQQERLQSPAVEGEAIATRTRRRRAAAAAAAVPKTNNSNENNKHKQQQQHPPVQAVVVNEHVVVAAKEEENRGLGEGVGAAGAEREEVAEKEMVGHDSGGRSNDKANAGGEDDANTPEVPQKIQVGNSPCYKVERKLGKGGFGQVYVGRRCSGNLNERTGPGAVEVALKLEHRTSKGCTYGPPYEWQVYNTLGGSHGVPQVHYKGRQGDYYVMVMDILGPSLWDVWNNNNSHAMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTSDEKKLFLVDLGLATKWRDSATGSHVEYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLLRGRLPWQGFQGENKGFLVCKKKMGTSPEIICCFCPQPFKQFVEHVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIGHKRGRLAMEEEDDDQPKKKTRIGLPASQWISVYNARRPMKQRYHYNVSDARLSQHIEKGNEDGLYISSVASCQSVWALIMDAGTGFAGQVYELSPFFLHKEWIVEQWELGYYISAIAGAANGSSLVVMSKGTQFVQQSYKVSDSFPFKWINKKWREGFYVTSMATSGPRWGVVMSRGAGYSDQVIELDFLYPSEGIHKRWDSGYRITSTAATWDQAAFVLSVPRRKPLDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0179 710 Gene3D Transferase(Phosphotransferase) domain 1 112 467 - -
Vra9g0179 710 MobiDBLite consensus disorder prediction 83 138 - -
Vra9g0179 710 PANTHER CASEIN KINASE 1-LIKE PROTEIN HD16 ISOFORM X1 105 683 - -
Vra9g0179 710 CDD STKc_CK1 146 422 - -
Vra9g0179 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Vra9g0179 710 MobiDBLite consensus disorder prediction 1 70 - -
Vra9g0179 710 ProSiteProfiles Protein kinase domain profile. 146 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0179 710 PANTHER CASEIN KINASE-RELATED 105 683 - -
Vra9g0179 710 SUPERFAMILY Protein kinase-like (PK-like) 145 426 IPR011009 -
Vra9g0179 710 ProSitePatterns Protein kinases ATP-binding region signature. 152 184 IPR017441 GO:0005524
Vra9g0179 710 MobiDBLite consensus disorder prediction 98 114 - -
Vra9g0179 710 Pfam Protein kinase domain 146 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0179 710 MobiDBLite consensus disorder prediction 47 69 - -
Vra9g0179 710 SMART serkin_6 146 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0179 Vra-Chr9 1235960 1245606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0179 227 422 MAP Kinase Kinase Kinase AT5G50180 24.121 6.01e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vra9g0179 Pkinase 7.9e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0179 - - gmx:100799630 1212.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0179 9 1235960 1245606 Vra9g0179 9 1235960 1245606 ECH