Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0171 ATGACACAAACAACAACCTCGTCTGAAACAACCTCTTCTACGTCGTCGTCACCGTCCTCGCATTCGGGCTCAAAGGCTCATGCCCGGGCCAAGAGGCCCAGAGACTGCAGCAGGCACCCGGTGTACCACGGCGTGCGGAAGCGCAATTGGGGCAAATGGGTCTCGGAAATCCGCGAACCGCGCAAGAAGTCCCGCATCTGGCTCGGAACCTTTGCCACCCCCGAAATGGCGGCGCGGGCCCATGACGTGGCGGCGCTCACCATCAAGGGCCAATCCGCAATCCTCAACTTCCCGGAAATCGCGGACCTGCTCCCCCGCCCCCTCACGTGCTCCCCACGCGACATTCAAGCCGCCGCAACCGCGGCCGCCTCCATGTCTAAATTCGACCCCGTAACACAAACCTCGGACTCAGAAACAGAAACTTCGGAAGAATCCGAACTGAGCGAGATAGTTGAGCTTCCAAACATCGAAGACAGCTTTAGCTTTGACTCGTCCGTTGACTCGTTCGTGATGGTCGACGTGGTGGACAGTTGGATGTTTCCGCCATTGGACTCGTTCTGCGCGGCCTTTTCCGATGAGTTGTTTCCGCAACAGTGTTGCTCTGAAACGCTATTACCCATTTGGGATTGA 630 0.5762 MTQTTTSSETTSSTSSSPSSHSGSKAHARAKRPRDCSRHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALTIKGQSAILNFPEIADLLPRPLTCSPRDIQAAATAAASMSKFDPVTQTSDSETETSEESELSEIVELPNIEDSFSFDSSVDSFVMVDVVDSWMFPPLDSFCAAFSDELFPQQCCSETLLPIWD* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0171 209 MobiDBLite consensus disorder prediction 1 24 - -
Vra9g0171 209 CDD AP2 42 99 IPR001471 GO:0003700|GO:0006355
Vra9g0171 209 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 188 - -
Vra9g0171 209 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700|GO:0006355
Vra9g0171 209 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Vra9g0171 209 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Vra9g0171 209 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Vra9g0171 209 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Vra9g0171 209 MobiDBLite consensus disorder prediction 1 42 - -
Vra9g0171 209 MobiDBLite consensus disorder prediction 126 147 - -
Vra9g0171 209 Pfam AP2 domain 40 90 IPR001471 GO:0003700|GO:0006355
Vra9g0171 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 188 - -
Vra9g0171 209 SUPERFAMILY DNA-binding domain 41 98 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0171 Vra-Chr9 1159947 1161109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0171 25 182 AP2-EREBP Transcription Factor Family AT5G11590 53.672 1.67e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra9g0171 AP2 4.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0171 K09286 - gmx:100804056 276.174