Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0165 ATGTCTACACCCTTTGAACATGATTACATAGGCTTAGCAGAGACTCCATACATGGAGAAAAGCTGTGATAAGATATCCTCTTCAGTTTCCTCCAACCTTTTATCTGAGGATGAGAACAGTTCATCTCTGAACTTCAAGGAGACAGAGCTGAGGCTTGGTCTGCCAGGTTGTGAGTTTTCTGAGAACAAACCAGGAGCTGCAGGGATCTCTCTTTTTGGCAAGGATTTGCAGAGTAGTGGCTATTCTGCTTCCTCAACTCCTTCCAAGAACCTCAAGAGGGGTTTCTCTGATACCATTAGTTCCTCCTCCTCCTCTTCTGGGAAATGGATTTTCTCAGGCAGTGATGCAACTGGGGATGATTTGAGAAATGGGGCTAATACCTCTGCACTCTGCAACAAAGAGGTTGGTTTGGTTCCTCACTCTGAGAAGCCGCCTCAGGTTTCTGCAACTGCAACAATTGAACATGCTACTGCTCCTGCTGAAAAAGCACAAGTTGTGGGATGGCCACCGATTCGGTCTTTTCGGAAGAACAGAATGGCCTATAATTTGGCAAAAAGCAACACTGAATCTGAGGAGAAATCAAGAGTTGGTTGTCTTTATGTTAAGGTCAGCATGGATGGCGCACCTTATCTCAGAAAGGTTGATCTGAAAAACCACTGCAACTATATTGAACTTTCTTCTGCTCTTGAGAAAATGTTCAGCTGCTTTACCATTGGTCAATGTAGTGCACGTGGAGTTTCTGGTGGGAAAGAGGGATTGAGTGAGAGAGCTTTCAAGGATCTTGTTGATGGCTCTGAATATGTTCTTACTTATGAAGATAAAGATGGAGATTGGATGCTAATGGGTGATGTGCCTTGGGAAATGTTCACTGAGTCATGTAAGAAACTAAGGATAATGAAAGGCTCGGAGGCAATTGGACTAGCTCCAAGGGCAATGGAAAAATCTAGGAGCCAATATTATTAG 963 0.4382 MSTPFEHDYIGLAETPYMEKSCDKISSSVSSNLLSEDENSSSLNFKETELRLGLPGCEFSENKPGAAGISLFGKDLQSSGYSASSTPSKNLKRGFSDTISSSSSSSGKWIFSGSDATGDDLRNGANTSALCNKEVGLVPHSEKPPQVSATATIEHATAPAEKAQVVGWPPIRSFRKNRMAYNLAKSNTESEEKSRVGCLYVKVSMDGAPYLRKVDLKNHCNYIELSSALEKMFSCFTIGQCSARGVSGGKEGLSERAFKDLVDGSEYVLTYEDKDGDWMLMGDVPWEMFTESCKKLRIMKGSEAIGLAPRAMEKSRSQYY* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0165 320 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 311 IPR003311 GO:0005634|GO:0006355
Vra9g0165 320 Pfam AUX/IAA family 47 310 IPR033389 -
Vra9g0165 320 SUPERFAMILY CAD & PB1 domains 198 300 - -
Vra9g0165 320 Gene3D - 192 313 - -
Vra9g0165 320 PANTHER AUXIN-RESPONSIVE PROTEIN 6 311 - -
Vra9g0165 320 ProSiteProfiles PB1 domain profile. 198 301 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0165 Vra-Chr9 1117604 1120185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0165 186 304 B3 DNA Binding Superfamily AT2G46530 31.667 2.70e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra9g0165 AUX_IAA 3.7e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0165 K14484 - gmx:100804782 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0165 9 1117604 1120185 Vra9g0165 9 1117604 1120185 ECH