Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0162 ATGATGGCTGGCAACCCTAACTGGTGGACTACTCATCCACCATCTTTGATCCCTCCTCAGTATGTTCTTGGATCTTCTTCTTCTATACCTTTCAATTCTTCCACACAAAACCCTGATCAGCCTCCTCCTTCATTGAGCCAGCTTCTTTTCACTGGTTTACCGGGAGAGGAGGAGAGAGTGGCATTCAGTCATTTTCAATCAAAGAAGTTGGATGAATGGAATGAACACATGCTTAATCCATCCCCCATAAATCCTATGGTTGATGTAATAAAGCAAGAGGTTTCCCAAAGTGGTAGCTTCTTTCACCAGGGACATGATCAGGAATTTCAGGTTTCTGGAGCTCCTTGGTCACACATGCTGCCAGTTTCTTCTTCTCCTATGTCTAGTGTTGTTGCTAGCTTCAGTAGTAGTAATAATTTATTGGATTTCACTTATAACAAGGAAGATCATAGGAAGAACCAACTACCAGATCACACATCCGAGTGTAATAATACCACAGCAACCGCTGGAGTTTACAAGAAGACTAAGTGTCAACCATCTTCAAGCCAACCACCTCTCAAGGTGAGAAAGGAGAAGCTAGGTGATAGAATAACAGCCCTTCACCAGCTAGTTTCCCCATTCGGAAAGACTGACACAGCTTCTGTCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAGGCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTGTACATGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGCTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAGGATGCAAAAGATAAGCCAAAGGACTTGAGGAGTAGAGGGTTGTGCTTGGTTCCTGTCTCTTGTACCCAACATGTTGGAAATGAAAATGGAGCTGATTACTGGGCACCAGCATATGGCAGTGGATTTTAA 969 0.4355 MMAGNPNWWTTHPPSLIPPQYVLGSSSSIPFNSSTQNPDQPPPSLSQLLFTGLPGEEERVAFSHFQSKKLDEWNEHMLNPSPINPMVDVIKQEVSQSGSFFHQGHDQEFQVSGAPWSHMLPVSSSPMSSVVASFSSSNNLLDFTYNKEDHRKNQLPDHTSECNNTTATAGVYKKTKCQPSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLGNGSKNMRNPQSVHGERNSVFPEDPGQLLNDNGLKRKGAPNQDAKDKPKDLRSRGLCLVPVSCTQHVGNENGADYWAPAYGSGF* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0162 322 MobiDBLite consensus disorder prediction 241 289 - -
Vra9g0162 322 PANTHER OS05G0228400 PROTEIN 23 309 - -
Vra9g0162 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 226 IPR011598 GO:0046983
Vra9g0162 322 Gene3D - 187 243 IPR036638 GO:0046983
Vra9g0162 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 238 IPR036638 GO:0046983
Vra9g0162 322 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 23 309 - -
Vra9g0162 322 CDD bHLH_AtbHLH_like 187 234 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0162 Vra-Chr9 1092274 1095085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0162 165 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 50.000 4.85e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0162 - - gmx:100802121 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0162 9 1092274 1095085 Vra9g0162 9 1092274 1095085 ECH