Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0157 ATGAGTCGCTCATTGAAAGCTTTCAACAAACACCTTACTCTCCTCCCTCTCCCTCTACACCTACGCTCTTCTTCTGCCCATCCCTTCATAACTTCCTCTTCTTTCCCTCTTTTCCCACATCACGTTTCCTTCCCCAGGTTCTCTTTCTCTCACCTTCGTCCACTCTCGTCTTCTGCACCTGCTACATTAATGGAGGTGGTGAAAGCAATTGCTAGGCAAGAACCTGCAGTTCATGAAAATGTTGCTATCAGAGCTGATCAGAAGAGTTATAGTTACAAGGAACTCCTATCATCAGCACAGCAGATATCTAATCTCTTGTGTGCTGCCAGTGATGCACTGGAGGGAAATCTTGGTGGAGCTCGAATAGGAATTGTAGCCAAACCCTCTGCTGAATTTGTTGCTGGAATAATTGGGATTTGGCTTAGCGGAGGTGTTGCTGTTCCCCTTGCAACCAGCTATCCAGAAGTAGAGCTCTTGTATGTGATTGATAATTCGGATATATCTGCAGTACTGAGTACTGAAGAGCATAATGAATTAATGCAAAGCGTAGCCAATAAAAGCTCTTCCAAGTTTTTTCATCTTCCATCTGTTGTCAACATTTCTTCAGAGAAAAGCAGAAATGGACACTCACAGAATGGGAAAATTCAAGAAGACAGGGTTTTCTTGGATGATATCATAGGAGGATCAAGTGAAGATGATCCAGCACTGATTTTGTACACCAGTGGGACTACAGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTTCCCAGGTCCAAACTTTGGCAAAATCATGGGAGTACACGTCTGCTGACAAGTTTCTGCATTGTCTACCACTACATCATGTTCATGGGCTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGTTCCTCGGTTGAGTTTTTGCCAAAATTTAGTGTGAGGGGAGTTTGGCAGAGATGGCGTGAGTCATATCCAACTGATGGTTCTAAGGCTGACGATGCTATAACCGTGTTCACTGGAGTTCCAACTATCTATGCCCGATTGATACAAGGTTATAATGCAATGGATTCTGAGCTTAAACATGTTTCAGCATCTGCCGCAAATAACTTGCGTCTTATGATGTGTGGGTCCTCTGCACTTCCACTACCTGTTATGCAAGAATGGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAATTTGTTATGGCATTGTCAAATCCATTGAAAGGTGAGCGCAAGCCAGGAACTGTGGGCAAACCATTTCCTGGAATAGAGGTCAAGATCATTGCAGAAGAAGATGGTGAGGATGACAACACTGCAATGGGCGAGCTTTGCGTTAAGAGCCCTTCATTGTTTAAAGAATATTATAAACTTCCTGAGGTGACGAAGGAATCGTTTACTGATGATGGATTCTTTAAGACTGGAGATGCAGTTACTACAGATGAAGACGGATATTACATCATTTTAGGACGTACTAATGCTGATATAATCAAGGCTGGTGGCTATAAGCTGTCTGCATTGGAAATTGAATCAGTTATCATAGAGCATCCAGCTATCTTAGAATGCTGCATTTTAGGATTACCAGACAACGACTATGGAGAGATTGTAGGTGCAATCGTTGTGCTACATCCTGACGTTAAAGAGAAGAGAGATCAAGAATCAAAGCCTGCTCTAAGCCTAGAAGAATTATCTACCTGGGCCAAAGACAAAATTGCACCTTACAAGATTCCAACTAAATTAATCCTGTGGGAAAAACTCCCTCGTAATGCCATGGGGAAGATAAATAAAAAGGAGCTGAAGAAGCTGGTGGTTTCAGAACACTGA 1830 0.4284 MSRSLKAFNKHLTLLPLPLHLRSSSAHPFITSSSFPLFPHHVSFPRFSFSHLRPLSSSAPATLMEVVKAIARQEPAVHENVAIRADQKSYSYKELLSSAQQISNLLCAASDALEGNLGGARIGIVAKPSAEFVAGIIGIWLSGGVAVPLATSYPEVELLYVIDNSDISAVLSTEEHNELMQSVANKSSSKFFHLPSVVNISSEKSRNGHSQNGKIQEDRVFLDDIIGGSSEDDPALILYTSGTTGKPKGVVHTHRSIISQVQTLAKSWEYTSADKFLHCLPLHHVHGLFNGLMAPLYAGSSVEFLPKFSVRGVWQRWRESYPTDGSKADDAITVFTGVPTIYARLIQGYNAMDSELKHVSASAANNLRLMMCGSSALPLPVMQEWEAITGHRLLERYGMTEFVMALSNPLKGERKPGTVGKPFPGIEVKIIAEEDGEDDNTAMGELCVKSPSLFKEYYKLPEVTKESFTDDGFFKTGDAVTTDEDGYYIILGRTNADIIKAGGYKLSALEIESVIIEHPAILECCILGLPDNDYGEIVGAIVVLHPDVKEKRDQESKPALSLEELSTWAKDKIAPYKIPTKLILWEKLPRNAMGKINKKELKKLVVSEH* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0157 609 ProSitePatterns Putative AMP-binding domain signature. 237 248 IPR020845 -
Vra9g0157 609 Gene3D - 497 609 IPR045851 -
Vra9g0157 609 SUPERFAMILY Acetyl-CoA synthetase-like 59 606 - -
Vra9g0157 609 CDD MCS 81 603 - -
Vra9g0157 609 Pfam AMP-binding enzyme C-terminal domain 510 595 IPR025110 -
Vra9g0157 609 Pfam AMP-binding enzyme 79 499 IPR000873 -
Vra9g0157 609 Gene3D - 67 493 IPR042099 -
Vra9g0157 609 PRINTS AMP-binding signature 232 243 IPR020459 -
Vra9g0157 609 PRINTS AMP-binding signature 244 252 IPR020459 -
Vra9g0157 609 PANTHER MALONATE--COA LIGASE-LIKE 43 605 - -
Vra9g0157 609 PANTHER ACYL-COA SYNTHETASE 43 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0157 Vra-Chr9 1058718 1065372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0157 231 607 Monolignol Biosynthesis Gene Families AT4G19010 29.306 5.27e-44 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0157 K18660 - gmx:100813324 1011.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0157 9 1058718 1065372 Vra9g0157 9 1058718 1065372 ECH