Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0148 ATGTCGTCTCCGTCGCCGGCGGAGACTCCTTCCGGCACGAACTCCACTACGTCTCCTCCTCCTCCGGATGAAACACCTCTCGTACCTAATGCCACTGTCTCCCCTCCTCCGCCTCCCGACATCACCAGTGCCGCCGTTAGTCCTCCTCCGCCGTTAGCCGCAGCTCCGTCGAGTCTCAGTGGCGGCGGGTTGTCGCCGGCTACATTGAGTGGAATAATTATAGGAGCCGTGTTAGGTGCAGTAGGTATGCTTATCGTTGGGGGCGTTTTCTTTTGCGTCTATAGGAATTGGAAAAAGAAGAGAAGCCAGAACAACTACTCTCAACCGTCCCAACCGAAAGTTGACATGGCTGGTGTTTCTCCAACGCCAGATGGAAAAGTAGGCTTGCCGCCCAAGCCTACTCCAGGGGGTTTAGGGAATCAGAAACTGTCATCCTCTGGTCTCCCGACACCCACTGTCAATTCTTCAGGCACTGCAAGTAGTTGGGGTTCCGAGAAGGTGAAGCCTTCACCTGGCATTTCCTTGGCGCTATCTCAAAGCAGTTTTACACACGATGAATTAGTTATGGCAACGGATGGATTCTCCTACTCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTCCACAAAGGAGTTCTCCCAAATGGGAAAATTGTTGCAGTCAAGCAGTTGAAATCTGAGAGTAGACAAGGGGAGCGTGAGTTCCATGCAGAAGTCGATGTCATTAGCCGTGTGCATCACAGACACCTTGTTTCCCTTGTTGGTTACTGCATATCAGACAACCAGAAGATGCTTGTCTACGAGTATGTGCCAAATAATACACTAGAATTTCATTTGCATGGAAAAGACAGACCACCTATGGACTGGTCAACAAGGATGAAGATTGCAATAGGATCTGCAAAAGGATTGGCATATCTGCATGAGGACTGTAATCCCAAAATCATACACCGAGACATCAAGGCATCTAACATTCTTATTGATGATAGCTTTGAGGCTAAGGTTGCAGATTTTGGACTTGCAAAGTTTTCATCAGACACAGAAACACATGTTTCTACTCGAGTGATGGGAACTTTTGGATACATGGCTCCAGAGTATGCTGCTAGTGGGAAACTAACAGAAAAGTCAGATGTTTTCTCCTTTGGTGTTGTGCTGTTGGAGTTGATCACTGGACGGAAACCCGTTGATAAAACTCATCCCTTCTTAGATGACAGCATGGTTGAATGGGCTAGGCCTTTACTTTCTCAAGCGTTTGAGAATGGCAACTTTGATGGACTTCTTGATCCAAAGTTGCAGAAAAATTACAATCATGATGAGATGGTTCGAATGGCCGCTTGTGCCGCATGTTGTGTGCGCCATTCAGCCAGGCTTCGGCCTCGAATGAGCCAGGTTGTTCGAGCTCTAGAAGGAAATATTTCTCTAGAAGATCTAAATGAGGGGAGTGCTCCTGGACACAGCAGAGTTTTTGGTTCCTTTGAGGGTTCTAGCTATGACAGCGTCCAATACAGTGAAGACATGAAGAACTTCAGGAAGCTGGCACTGGAAAGCCAAGAGCAAGGTATTAGTGAGTACAGTGGTCCCAGCAGTGATTACGGTCGACATCCATCTGTCTCTACCAGTTCGGGACAGCAAAATACCCAGGAAATTGAATTGGGGGAACGTGAACGGTAG 1668 0.4772 MSSPSPAETPSGTNSTTSPPPPDETPLVPNATVSPPPPPDITSAAVSPPPPLAAAPSSLSGGGLSPATLSGIIIGAVLGAVGMLIVGGVFFCVYRNWKKKRSQNNYSQPSQPKVDMAGVSPTPDGKVGLPPKPTPGGLGNQKLSSSGLPTPTVNSSGTASSWGSEKVKPSPGISLALSQSSFTHDELVMATDGFSYSNLLGQGGFGYVHKGVLPNGKIVAVKQLKSESRQGEREFHAEVDVISRVHHRHLVSLVGYCISDNQKMLVYEYVPNNTLEFHLHGKDRPPMDWSTRMKIAIGSAKGLAYLHEDCNPKIIHRDIKASNILIDDSFEAKVADFGLAKFSSDTETHVSTRVMGTFGYMAPEYAASGKLTEKSDVFSFGVVLLELITGRKPVDKTHPFLDDSMVEWARPLLSQAFENGNFDGLLDPKLQKNYNHDEMVRMAACAACCVRHSARLRPRMSQVVRALEGNISLEDLNEGSAPGHSRVFGSFEGSSYDSVQYSEDMKNFRKLALESQEQGISEYSGPSSDYGRHPSVSTSSGQQNTQEIELGERER* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0148 555 MobiDBLite consensus disorder prediction 15 55 - -
Vra9g0148 555 MobiDBLite consensus disorder prediction 138 167 - -
Vra9g0148 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Vra9g0148 555 MobiDBLite consensus disorder prediction 101 167 - -
Vra9g0148 555 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 540 - -
Vra9g0148 555 Gene3D Phosphorylase Kinase; domain 1 158 269 - -
Vra9g0148 555 ProSitePatterns Protein kinases ATP-binding region signature. 200 222 IPR017441 GO:0005524
Vra9g0148 555 MobiDBLite consensus disorder prediction 515 555 - -
Vra9g0148 555 SUPERFAMILY Protein kinase-like (PK-like) 169 467 IPR011009 -
Vra9g0148 555 MobiDBLite consensus disorder prediction 101 115 - -
Vra9g0148 555 Pfam Protein tyrosine and serine/threonine kinase 197 466 IPR001245 GO:0004672|GO:0006468
Vra9g0148 555 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 3 540 - -
Vra9g0148 555 SMART serkin_6 194 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0148 555 MobiDBLite consensus disorder prediction 1 61 - -
Vra9g0148 555 ProSiteProfiles Protein kinase domain profile. 194 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0148 555 MobiDBLite consensus disorder prediction 517 547 - -
Vra9g0148 555 Gene3D Transferase(Phosphotransferase) domain 1 270 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0148 Vra-Chr9 993155 998026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0148 37 541 Trihelix Transcription Factor Family AT1G70460 51.451 6.20e-162 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vra9g0148 PK_Tyr_Ser-Thr 7.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0148 - - ccaj:109808169 838.18