Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0144 ATGATGGATTTCTGGCCAGAATTTCTTGCAAGCAGTTCCGGAAAAGAGTTTGTAGCTGGTGGTTTTGGAGGCATCGCTGGTATAATTGCAGGTTATCCACTTGACACACTTCGCATCAGATTGCAGAACACAAAAAATGGCTCTGCTTTCACCATCTTTAAGCACATGGTGTTAAGGGAAGGAACAGCTTCTTTGTACCGCGGCATGGCCGCACCGTTAGTCTCTGTTACTTTTCAGAATGCAATGGTTTTCCAAACGTACGCGGTTCTGTCAAGGGCATGTGACCCATCTGTTTCTCCTAAAGACCCTGCTTCCTATAAGGGTGTTGCATTGGGAGGAACTGGTACAGGAGCACTTCAGAGTCTGTTACTTTCCCCTGTAGAGTTGATCAAAATTCGACTTCAGCTGCAGAAAGAAAGCCAGATGACAGAATCCATAAAGGGTCCTATAAGGCTCGCTAAAAACATTTGGAGAAAAGAAGGCCTTCGAGGCATTTATCGAGGACTTGGTGTGACTGTGATGAGGGATGGACCCTCTCATGGTTTATACTTCTGGACATATGAATACATGAGGGAACAACTTCACCCTGGTTGCAGAAAAAGTGGTGAAGAAAGTTTGAAGACTATGTTAGTAGCAGGAGGAACAGCAGGGGTGGCTAGCTGGATCAGTTGCTACCCTTTGGATGTTGTAAAGAGTAGATTACAGGCTCAAACACCCTCTTCTTTAAAGTACAAAGGCATCGTAGATTGTTTCAGAAAGAGTGTTCATGAAGAAGGATACAGTGTGCTATGGCGGGGTTTAGGAACTGCAGTTACCAGAGCTTTCATAGTCAATGGCGCCATATTCTCTGCTTATGAGATTGCACTAAGATTACTGTTTCACAACGGAAATATTCATACGAAAGAAACTATTTAG 915 0.4393 MMDFWPEFLASSSGKEFVAGGFGGIAGIIAGYPLDTLRIRLQNTKNGSAFTIFKHMVLREGTASLYRGMAAPLVSVTFQNAMVFQTYAVLSRACDPSVSPKDPASYKGVALGGTGTGALQSLLLSPVELIKIRLQLQKESQMTESIKGPIRLAKNIWRKEGLRGIYRGLGVTVMRDGPSHGLYFWTYEYMREQLHPGCRKSGEESLKTMLVAGGTAGVASWISCYPLDVVKSRLQAQTPSSLKYKGIVDCFRKSVHEEGYSVLWRGLGTAVTRAFIVNGAIFSAYEIALRLLFHNGNIHTKETI* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0144 304 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 93 IPR018108 -
Vra9g0144 304 Gene3D Mitochondrial carrier domain 14 300 IPR023395 -
Vra9g0144 304 SUPERFAMILY Mitochondrial carrier 14 286 IPR023395 -
Vra9g0144 304 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 2 294 - -
Vra9g0144 304 Pfam Mitochondrial carrier protein 111 194 IPR018108 -
Vra9g0144 304 Pfam Mitochondrial carrier protein 209 295 IPR018108 -
Vra9g0144 304 Pfam Mitochondrial carrier protein 13 92 IPR018108 -
Vra9g0144 304 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 2 294 - -
Vra9g0144 304 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 193 IPR018108 -
Vra9g0144 304 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Vra9g0144 304 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Vra9g0144 304 PRINTS Mitochondrial carrier protein signature 119 137 IPR002067 GO:0055085
Vra9g0144 304 PRINTS Mitochondrial carrier protein signature 166 184 IPR002067 GO:0055085
Vra9g0144 304 PRINTS Mitochondrial carrier protein signature 213 235 IPR002067 GO:0055085
Vra9g0144 304 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 291 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0144 Vra-Chr9 957888 960504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0144 2 295 Antiporters AT1G79900 69.831 2.63e-141 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0144 K15109 - gmx:100812056 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0144 9 957888 960504 Vra9g0144 9 957888 960504 ECH