Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0136 ATGAGTGTGGTGGGTTTTGATTTCGGTAATGAGAGCTGCGTTGTTGCAGTTGCGAGGCAAAGAGGGATTGACGTTGTGCTTAATGATGAGTCCAAACGTGAAACGCCTGCTATTGTGTGCTTTGGTGAGAAGCAACGTTTCATTGGCACTGCTGGTGCTGCCTGCAGTCTGATGAACCCTAAGAATTCAATATCAGAGTTTAAGAGACTCATTGGCAGAAAATTCTCTGATCCTGAATTGCAACGGGATCTTAAGTCATTGCCATTTCTTGTTACCGAGGGGAATGATGGGTATCCGTTGATTCACGTGCAATACTTGGGTGAGGCTAAGAAATTTACACCTACACAAGTGTTTGGTATGATGTTGTCGAATCTTAAGGAAATTGCAGAGAAGAATCTCACTACGGCTGTTGTTGATTGTTGCATTGGAATTCCAGTTTATTTTACTGATTTGCAGAGGCGGGCGGTGTTGGACGCGGCCACGATTGTTGGTCTACACCCGCTTCAATTGATTCATGAAATGACTGCCACTGCTTTGGCGTATGGGATTTATAAAACGGACCTTCCAGAAAACGATCAACTGAATGTTGCTTTTGTCGATGTTGGGCATGCTAGCATGCAAGTCTGTATTGCTGGATTCAAGAAGGGGCAGTTGAAAGTGTTGGCTCATTCGTATGATAGGTCTTTAGGTGGTAAGGATTTTGACGAGGTTTTGTTCCATCACTTTGCTACTAAGTTCAAGGAGGAGTATAAGATTGATGTTTTCCAGAATGCTAGGGCTTGCTTAAGGTTGAGGGCTGCCTGTGAGAAGATGAAGAAGATGCTTAGTGCAAATAGTGAGGCACCTCTCAACATTGAGTGTTTGATGGACGAGAAGGATGTTCGTGGCTTCATGAAGCGAGATGATTTTGAGCAATTAAGTCTTCCAATTTTGGAACGCGTCAGGGGACCTTTGGATAAGGCACTTGCTGAAGCAAATCTTACCATTGAAAATGTGCATATGGTTGAGGTGGTTGGTTCAGGTTCTCGTGTACCCGCCATAACCAGAATATTGACAGAGTTTTTCAAGAAAGAGCCTAGGCGAACAATGAATGCTAGTGAGTGTGTTGCCAAGGGTTGTGCTTTGAAATGTGCAATTCTTAGTCCCACGTTTAAAGTACGAGAATTTCAGGTCAATGAAAGCCTTCCTTTCTCGATTTCCCTTGCATGGAAAGGTACTGGTCCAGATGCACAGGAGAATGCACCACAAAATCAGCAGAGTTCTCTTGTTTTTCCCAAGGGTAATCCCATACCAAGTATCAAAGCTCTAACATTCTACAGGTCAGGAACATTTTCTATTGATGTACATTATGGCGATGTAAGTGAGCTGCAAACACCTACCAAGATTAGCACATATACTATTGGTCCGTTCCAAACTGCAAATAGTGAAAGGACAAAAGTGAAAGTGAAAGTTCGTTTGAATATTCATGGAATTGTATCTCTGGAGTCCGCCATGCTCCTGGAAGAAAACGAAGTTGAGGTTCCGATTACCAAAGAATCAACAGGGAAAAATACTAAGCCAAATATCAACGAAGCCCCAATTGAGGCTGCTACACCTCCAGCCTCCGATGACACTAGTGCAAATGTGCAAGATGCAAAAGTTAGTACTGATGCTTCGGAGGGTGAAAATGGTGTTCCTCAGAATGAAGATAAGCCTCTGCAAACAAATATTGATACCAAGGCTCCAAAGAAAAAGGTTAAAAAAACAAGTATTTATGTATCAGAGTTAGTTTATGGAGCAATGGGCTCTTTGCATGTCCAAAAGGCAATAGAGAAGGAGTTTGAAATGGCTTTGCAAGATCGTGTGATGGAGGAAACGAAGGACAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAGCTTAATGACAAATACCAAGAGTTTGTCATTGCTTCAGAGAGAGAAGATTTTACTGCCAAACTCCAGGAAGTGGAAGATTGGCTTTATGATGAGGGTGAAGATGAAACTAAAGGTGTATATATTGCTAAGCTTGAAACACTAAAAAAGCAAGGTGATCCAATTGAAGGACGTTACAAAGAATACATGGAGAGGGGTAATATGATTGAGCAATTCATGTATTGTATAAATAGTTATAGAGAAGCTGCAAAGTCGAAGGACCCCAAATTTGATCACATTGACATTAACGAGAAACAGAAGGTCATAAATGAATGTGTTGAAGCTGAGAAATGGTTTATTGAGAAGCAACAACTACAAAGCTCACTTCCAAAATATATCAACCCTGTACTCTTGTCAGCTGAAATTAGAAAGAAAGCTGAGATTGTTGATAGGTTCTGCAAGCCAATTATGACAAAACCAAGGCCAACTACTTCCACTGGATCAGGAGCCCCATATTCGCACGGTGATGAGACGCAACACCCTAGAGGGAATGCAAATGCCAGCAGTAACGAAAATACTGGGGATAGAAGTAGCCAGGCTGCATCAGCTTCTCCTGAACCAATGGAGACTGATAACTCTGAGAACGGAGACTCTGCATAA 2544 0.4194 MSVVGFDFGNESCVVAVARQRGIDVVLNDESKRETPAIVCFGEKQRFIGTAGAACSLMNPKNSISEFKRLIGRKFSDPELQRDLKSLPFLVTEGNDGYPLIHVQYLGEAKKFTPTQVFGMMLSNLKEIAEKNLTTAVVDCCIGIPVYFTDLQRRAVLDAATIVGLHPLQLIHEMTATALAYGIYKTDLPENDQLNVAFVDVGHASMQVCIAGFKKGQLKVLAHSYDRSLGGKDFDEVLFHHFATKFKEEYKIDVFQNARACLRLRAACEKMKKMLSANSEAPLNIECLMDEKDVRGFMKRDDFEQLSLPILERVRGPLDKALAEANLTIENVHMVEVVGSGSRVPAITRILTEFFKKEPRRTMNASECVAKGCALKCAILSPTFKVREFQVNESLPFSISLAWKGTGPDAQENAPQNQQSSLVFPKGNPIPSIKALTFYRSGTFSIDVHYGDVSELQTPTKISTYTIGPFQTANSERTKVKVKVRLNIHGIVSLESAMLLEENEVEVPITKESTGKNTKPNINEAPIEAATPPASDDTSANVQDAKVSTDASEGENGVPQNEDKPLQTNIDTKAPKKKVKKTSIYVSELVYGAMGSLHVQKAIEKEFEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDKYQEFVIASEREDFTAKLQEVEDWLYDEGEDETKGVYIAKLETLKKQGDPIEGRYKEYMERGNMIEQFMYCINSYREAAKSKDPKFDHIDINEKQKVINECVEAEKWFIEKQQLQSSLPKYINPVLLSAEIRKKAEIVDRFCKPIMTKPRPTTSTGSGAPYSHGDETQHPRGNANASSNENTGDRSSQAASASPEPMETDNSENGDSA* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0136 847 Gene3D - 38 113 - -
Vra9g0136 847 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 591 IPR029047 -
Vra9g0136 847 CDD HSPA4_like_NDB 2 381 - -
Vra9g0136 847 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 702 793 IPR029048 -
Vra9g0136 847 Gene3D - 5 374 - -
Vra9g0136 847 Gene3D Actin; Chain A, domain 4 230 313 - -
Vra9g0136 847 Gene3D - 596 705 IPR029048 -
Vra9g0136 847 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Vra9g0136 847 Gene3D - 186 360 - -
Vra9g0136 847 Pfam Hsp70 protein 3 694 IPR013126 GO:0005524|GO:0140662
Vra9g0136 847 PANTHER HEAT SHOCK 70 KDA PROTEIN 14 1 846 - -
Vra9g0136 847 MobiDBLite consensus disorder prediction 787 847 - -
Vra9g0136 847 MobiDBLite consensus disorder prediction 534 568 - -
Vra9g0136 847 PRINTS 70kDa heat shock protein signature 2 15 - -
Vra9g0136 847 PRINTS 70kDa heat shock protein signature 30 42 - -
Vra9g0136 847 PRINTS 70kDa heat shock protein signature 140 160 - -
Vra9g0136 847 PRINTS 70kDa heat shock protein signature 332 348 - -
Vra9g0136 847 PRINTS 70kDa heat shock protein signature 363 383 - -
Vra9g0136 847 PANTHER HSC70CB, ISOFORM G-RELATED 1 846 - -
Vra9g0136 847 MobiDBLite consensus disorder prediction 785 847 - -
Vra9g0136 847 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Vra9g0136 847 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 547 IPR029047 -
Vra9g0136 847 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 597 693 IPR029048 -
Vra9g0136 847 MobiDBLite consensus disorder prediction 511 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0136 Vra-Chr9 904687 909931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0136 4 405 Calmodulin-binding Proteins AT1G16030 36.296 1.05e-82 276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0136 9 904687 909931 Vra9g0136 9 904687 909931 ECH
Vra5g2432 5 31416631 31421893 Vra9g0136 9 904687 909931 PCT