Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0126 ATGGCCAAAGAAGGTCTTGGACTTGAAATCACGGAGCTGAGATTGGGTCTACCCGATGCTCAGCAGGTGAATGTGGCTAACAAGAACGCTGAAAAGAAGAATAAGAGGGTGTTCTCGGAGATTGATGATGTTGGAGATGAAAACAGCTCCTCCGGCGGCGGTGGCGACCGGAAAATGGAGAACAAGAGTCAAGTGGTGGGGTGGCCTCCGGTGTGCTCCTACAGGAAGAAGAACAGTGTGAACGAAGCTTCGAAAATGTACGTTAAGGTTAGCATGGATGGTGCTCCTTTCTTGCGTAAAATGGATCTGGGTATGCACAAAGGATACTCCGATTTAGCCTTCGCTTTGGAGAAGCTCTTTGGTTGCTATGGAATGGTGGAAGCATTGAAGAATTCTGAGAATGGTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTTGTTGGAGATGTGCCATGGGAAATGTTCATGGAGTCTTGCAAGAGGTTGAGGATTATGAAGAGAGCAGATGCAAAGGGGTTCGGTTTGCAACCAAAAGGATCCTTAAAGGGATTCATAGAAAGCGTGGGAAAGTGA 585 0.4718 MAKEGLGLEITELRLGLPDAQQVNVANKNAEKKNKRVFSEIDDVGDENSSSGGGGDRKMENKSQVVGWPPVCSYRKKNSVNEASKMYVKVSMDGAPFLRKMDLGMHKGYSDLAFALEKLFGCYGMVEALKNSENGEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRADAKGFGLQPKGSLKGFIESVGK* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0126 194 ProSiteProfiles PB1 domain profile. 85 173 IPR000270 GO:0005515
Vra9g0126 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 177 - -
Vra9g0126 194 MobiDBLite consensus disorder prediction 37 62 - -
Vra9g0126 194 SUPERFAMILY CAD & PB1 domains 78 170 - -
Vra9g0126 194 Gene3D - 79 181 - -
Vra9g0126 194 Pfam AUX/IAA family 58 177 IPR033389 -
Vra9g0126 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 177 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0126 Vra-Chr9 810433 813512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0126 81 192 B3 DNA Binding Superfamily AT4G23980 32.143 7.72e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vra9g0126 AUX_IAA 6e-42 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0126 K14484 - gmx:547784 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0126 9 810433 813512 Vra9g0126 9 810433 813512 ECH
Vra9g0126 9 810433 813512 Vra5g2416 5 31280651 31283233 PCT