Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0124 ATGGTTGGAGGTTCCTTGGGAGGGTTGCAAGAGCACCTCAAGTTAGCCAGAGACTACGCTGTGGAAGGGCTCTACGACACTTCCATCATCTTCTTCGACGGCGCCCTTGCTCAGATCAACAAACACCTGAGCACCGTCGAGGACCCTTTGATTCGCGCAAAATGGATGAATGTGAAGAAAGCGCTTTCGGAAGAAACCGAAGTTGTGAAACAGTTGGATGCGGAGAGAAGGGCTTTCAAAGAAAACCCAATTGGAAGACGCGCCGTTTCGCCTCCCATTTCTGCCAAGTCCTCGTCTTTTGTTTTTCAGCCGTTGGATGAGTACCCCACTTCATCGAGCGGTCCTGCTCCTTTTGATGATCCTGATGTATGGCGCCCACCCAGTAGGGATACCAGTAGGAGACCCGCCAGGGCCGGTCAAGTGGGTACCCGCAAATCTCCCCAAGATGGGGCCTGGGCGCGAGGTTCTACTGCTAGAAGTGGTGCAACTGGGCGTGGTGGTGCTAAAGGTGGTGCTACTAGTAGGGTTAACTCGGGGACACGAGCGCCCGCTGCTGGAAAGAAGGGCAATGTTTCTGGAAAGTCTACCAATACCAAGACGGATACTGCAGCTGTTACTAATGGACAAAATGGTGATTCTGAAGATGGTAAGTCAAAGAAGGGTCAATATGAAGGTCCCGATCCTGAATTGGCTGCAATGCTTGAAAGGGATGTTTTGGAAACCTCTCCTGGAGTTAGATGGGATGATGTTGCAGGACTTACTGAAGCAAAAAGACTTCTAGAAGAAGCTGTTGTGCTTCCCTTGTGGATGCCTGAATATTTCCAGGGAATCAGGAGGCCATGGAAAGGCGTTCTCATGTTTGGACCCCCAGGAACCGGGAAGACACTTCTTGCTAAAGCGGTTGCTACTGAATGTGGGACCACTTTCTTTAACGTATCTTCTGCAACTTTGGCTTCTAAATGGCGTGGTGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGCACAATATTTATTGATGAAATTGATTCTCTATGCAATGCAAGGGGGGCATCTGGGGAGCATGAATCGTCTAGAAGAGTGAAATCTGAACTTCTTGTTCAGGTTGATGGTGTAAGCAATAGTGCCACAAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCGGCAACTAACTTCCCATGGGATATAGATGAGGCATTAAGGAGAAGGCTGGAAAAACGTATATATATTCCTCTTCCAAATTTCGAGAGTCGTAAAGAGCTGATCCGGATAAATTTGAAGACTGTTGAGGTGGCGACTGATGTGAATATAGATGAAGTGGCTCGGAGGACAGAGGGCTACAGTGGAGATGATTTGACCAATGTGTGTCGTGATGCTTCCTTGAATGGTATGAGGCGAAAGATAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCCAAGGATGAGATTTCAAAGGACCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCAGGCCGACATTGAACGCCACGAGAAGTGGTTTACCGAGTTTGGATCAGCATGA 1599 0.479 MVGGSLGGLQEHLKLARDYAVEGLYDTSIIFFDGALAQINKHLSTVEDPLIRAKWMNVKKALSEETEVVKQLDAERRAFKENPIGRRAVSPPISAKSSSFVFQPLDEYPTSSSGPAPFDDPDVWRPPSRDTSRRPARAGQVGTRKSPQDGAWARGSTARSGATGRGGAKGGATSRVNSGTRAPAAGKKGNVSGKSTNTKTDTAAVTNGQNGDSEDGKSKKGQYEGPDPELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVATDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALVKVQRSVSQADIERHEKWFTEFGSA* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0124 532 Pfam ATPase family associated with various cellular activities (AAA) 284 421 IPR003959 GO:0005524|GO:0016887
Vra9g0124 532 CDD AAA 278 421 - -
Vra9g0124 532 Pfam Vps4 C terminal oligomerisation domain 485 530 IPR015415 -
Vra9g0124 532 SMART AAA_5 280 423 IPR003593 -
Vra9g0124 532 Gene3D - 4 80 - -
Vra9g0124 532 ProSitePatterns AAA-protein family signature. 393 412 IPR003960 GO:0005524|GO:0016887
Vra9g0124 532 PANTHER AAA DOMAIN-CONTAINING 5 532 - -
Vra9g0124 532 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 5 532 - -
Vra9g0124 532 MobiDBLite consensus disorder prediction 105 226 - -
Vra9g0124 532 Gene3D - 422 508 - -
Vra9g0124 532 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 532 IPR028596 GO:0008017|GO:0008568|GO:0051013
Vra9g0124 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 528 IPR027417 -
Vra9g0124 532 Coils Coil 62 82 - -
Vra9g0124 532 Gene3D - 242 523 IPR027417 -
Vra9g0124 532 MobiDBLite consensus disorder prediction 190 212 - -
Vra9g0124 532 Pfam AAA+ lid domain 443 484 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0124 Vra-Chr9 788807 792628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0124 205 524 Calmodulin-binding Proteins AT3G56690 37.278 1.84e-51 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0124 K07767 - gmx:100787634 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0124 9 788807 792628 Vra9g0124 9 788807 792628 ECH
Vra5g2412 5 31253626 31256111 Vra9g0124 9 788807 792628 PCT