Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0096 ATGGTGCAATCAAGGAAATTCAGAGGTGTAAGGCAACGCCATTGGGGCTCGTGGGTTTCTGAGATTCGTCACCCATTATTGAAAAGGAGGGTGTGGCTTGGGACATTCGAGACAGCTGAGGAAGCAGCAAGAGCATACGATGAAGCCGCCATTTTGATGAGTGGAAGAAACGCTAAAACAAACTTCCCAGTTGGTGAAAACCAGGTGGTGAATCACAGCACTTCCTCTTCTTCATCTTCCACCTCTACATTGTCTGCAGTTCTGAGTGCAAAGCTTAGGAAGTGCTGCAAATCTCCCTCACCTTCCCTCACTTGCCTGAGGCTTGACACTGAGAATTCCCACATAGGGGTGTGGCAGAAGAGAGCAGGCCCTCGTTCTGACTCTAACTGGATCATGATGGTTGAGTTGGAAAAAAAGAACAGCCCTGATCATGATCATGATCATGATCATGATCAAGATCAAGCTCCTTCTTCTGATTCTGAAGTTCCTGTTGTTGTTGTTGATCATCATGCTGCAGAGAAGATAAAGCCTGAGGAAGGTAATGGCTTAGATGAGGAGCAGAGAATGGCTCTGCAGATGATAGAGGAGCTTCTGAATAGGAATTGA 606 0.4653 MVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVGENQVVNHSTSSSSSSTSTLSAVLSAKLRKCCKSPSPSLTCLRLDTENSHIGVWQKRAGPRSDSNWIMMVELEKKNSPDHDHDHDHDQDQAPSSDSEVPVVVVDHHAAEKIKPEEGNGLDEEQRMALQMIEELLNRN* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0096 201 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Vra9g0096 201 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Vra9g0096 201 MobiDBLite consensus disorder prediction 140 156 - -
Vra9g0096 201 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Vra9g0096 201 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vra9g0096 201 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Vra9g0096 201 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 201 - -
Vra9g0096 201 MobiDBLite consensus disorder prediction 166 186 - -
Vra9g0096 201 PANTHER ETHYLENE RESPONSE FACTOR 1 201 - -
Vra9g0096 201 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Vra9g0096 201 MobiDBLite consensus disorder prediction 140 186 - -
Vra9g0096 201 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Vra9g0096 201 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0096 Vra-Chr9 612268 613449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0096 1 201 AP2-EREBP Transcription Factor Family AT1G15360 60.377 1.07e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra9g0096 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0096 - - gmx:100796962 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0096 9 612268 613449 Vra9g0096 9 612268 613449 ECH