Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0080 ATGGCTTCATGGTTTTGCTGTGGAAAAGTTTCGAACCGCTCACGGAGAGGGAAAGAACAACCCACATGGCGGGTGTTTTCTTTGAAGGAATTACACTCTGCTACGAATAATTTCAACTATGACAACAAGCTTGGAGAAGGAAGCTTTGGCAGTGTGTACTGGGGCCAACTTTGGGATGGATCACAAATTGCGGTGAAAAGATTGAAAGTTTGGAGCAACAGGGCTGAGACAGAATTCACAGTTGAGCTTGAAATCTTAGCAAGAATACGACACAAGAATCTTCTCAGTCTTCGTGGCTACTGTGAAGAAGGACAAGAACGGTTAATTGTGTATGAATATATGCAAAATCTGAGTCTCCACTCTCATCTTCACGGACATCATTCATTCGAATGCTCTCTGGATTGGAATCTTCGGATGAACATCGCAATTGGTTCTGCTGAAGGAATTGTGTACCTTCACCACCAAGCAAGACCACGTATCATCCACAGGGATATTAAATCAAGCAATGTGTTGCTGGATTCTGATTTCAAGGCCAGGGTTGCTGATTTTGGGTTTGCCAAGTTGATCCCTGATTGGGCCACTCACGTGAGTACAAGAGTTAAGGGAACTATTGGCTACCTTGCACCAGAATATGCTATGTTGGGTAAAGCAAATGAGAGCTGTGATGTTTACAGTTTTGGTGTTCTTCTTCTAGAACTCGCTAGTGGCAGAAGACCAACAGAAAAGCTCAGTTCCACGGTGAGGCGATCGATAGTTGATTGGGCATTGCCATTGGTTTGTGAGAAGAAATTTAGTGAAATTGCTGATCCAAGACTAAATGGTAACTATGTGGAGGAAGAGCTTAAAAGAGTTGTTTTAGTTGGTCTTATGTGTGTTCAGGATCTGCCTGAGAAGAGACCAACCATGCTTGATGTGGTAGAGCTACTCAAGGGAGAGTCTAGGGATAGATTTTCTCATATAGAGAACAGTGACATGTTCAGAAACCCTCTAGCTGCAGAAATCAATAATGGAACATCATTGACTGATGACAGATTAGACTGTATCTCAGAAGAAAAAGAATTAGAACGTCCATTGAGAGAAAATGCTGAACTATGA 1095 0.4237 MASWFCCGKVSNRSRRGKEQPTWRVFSLKELHSATNNFNYDNKLGEGSFGSVYWGQLWDGSQIAVKRLKVWSNRAETEFTVELEILARIRHKNLLSLRGYCEEGQERLIVYEYMQNLSLHSHLHGHHSFECSLDWNLRMNIAIGSAEGIVYLHHQARPRIIHRDIKSSNVLLDSDFKARVADFGFAKLIPDWATHVSTRVKGTIGYLAPEYAMLGKANESCDVYSFGVLLLELASGRRPTEKLSSTVRRSIVDWALPLVCEKKFSEIADPRLNGNYVEEELKRVVLVGLMCVQDLPEKRPTMLDVVELLKGESRDRFSHIENSDMFRNPLAAEINNGTSLTDDRLDCISEEKELERPLRENAEL* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0080 364 PANTHER OS01G0750732 PROTEIN 2 356 - -
Vra9g0080 364 ProSiteProfiles Protein kinase domain profile. 38 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0080 364 Gene3D Transferase(Phosphotransferase) domain 1 114 326 - -
Vra9g0080 364 SUPERFAMILY Protein kinase-like (PK-like) 18 309 IPR011009 -
Vra9g0080 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Vra9g0080 364 Pfam Protein tyrosine and serine/threonine kinase 40 308 IPR001245 GO:0004672|GO:0006468
Vra9g0080 364 PANTHER BNAA05G14800D PROTEIN 2 356 - -
Vra9g0080 364 Gene3D Phosphorylase Kinase; domain 1 8 113 - -
Vra9g0080 364 ProSitePatterns Protein kinases ATP-binding region signature. 44 66 IPR017441 GO:0005524
Vra9g0080 364 SMART serkin_6 38 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0080 Vra-Chr9 523367 525669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0080 11 305 Trihelix Transcription Factor Family AT1G68690 48.495 1.55e-92 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vra9g0080 PK_Tyr_Ser-Thr 2.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0080 - - gmx:100814204 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0080 9 523367 525669 Vra9g0080 9 523367 525669 ECH