Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0079 ATGGATGGAAGAATCAACGCGGCTATTGAAAGTAGCAGCGGTTCAATTTCGAGAAAAAGAAAACACAGCGTCGTTGGATTTGGTTCAGAAGTGGACAGTGCCATAAGGAGTGGAACTGCGCCAAATTCGGAAGTATCCTCCGTCAACGGATTCGATCGCGCAGTGGAGAATGACATCAAGAGTATCACTGCGTCAAATTTGGAAACACCGGTCAGTGTTGATAGTTTTGGTCGGACGGTGGAGAATGCAATGATGAGCTTTGCGCCAAATCCCCCTCCTCTCTACGGTTTCGCTGAGGTAGTAGATCTTGCCATTATCAGCCACGTCGGTTTTGAAGAAGATCAAAATGAAACTAAAGAGTCGCCCGGCGGCACTGCCTACCAAGGCTTCCCGGACGCAAGGAGAGGGAAAGAACAACCCGCATGGAGGGTGTTTTCTTTGGAGGAATTAAAGTCTGCTACTAATAATTTCAAACGTGATAACATGCGAGGAGAAGGAGGCTTTGGCAGTGTGTACTGGGGCCAACTATCGGATGGATCGCAAATTGCGGTGAAAAGATTGTATTTTCGGAGCGAAGTAACTGAAACATTTACAGTTGAACTTGAAATCTTGGCAAGAATACGACACAAGAATCTTCTCAGTCTTCGTGGCTACTGTGCAGAAGGACAGGAACGGTTAATTGTGTATGAATATATGCAAAATCTGTGTCTCCACTCTAATCTTCATGGACATCATTCATTGAAATGCCCTCTGGATTGGAATCGTCGGATGAATATTGCAATTGGTTCCGCTGAAGGAATTGCGTACCTTCACCAGCAAGCAACACCACGTATCATCCACAGGGATATTAAATCAAGCAATGTGTTGCTGGATTCTGATTTCAAGGCCAGGGTTGCTGATTTTGGGTTTGCGAAGTTGATCCCTGATGGGGCAACACATGTGACTACAAAAGTTATGGGAACTCGTGGCTATCTTGCACCAGAATATGCCATGTTAGGTAAAGCAAAAGCGAGTTGTGATGTCTACAGTTTTGGTGTTCTCCTTCTAGAACTCGCTAGTGGGAGAAGACCAGCCAAAATGCTTAATTCCACGGTGAGGAGATCGATAGTTGATTGGGCATTGCCATTGGTCTGTGAGAAGAAATTTAGTGAAATTGCTGATCCAAGATTAAATGGTAACTATGTGGAGGAAGAGCTTAAAAGAGTCGTTTTAGTTGCTCTTATGTGTGCTCAGGATCTGCCTGAGAAGAGACCAACCATGCTTGATGTGGTAGAACTACTCAGGGGAGAGTCTAAGGATAAATTTTCTCATATAGAGAACAGTGACATGTTCAGAAGTCGTCTTGCTGCTGATGGAACTTCAGTGGCTGAAGATAGTTTAGACTACATCTTAGACGAAAAAAATTTAGAACATCCGCTGAGAAAGAATGCTTCGTGTTTTTTTGGTATTGTTGCAATTTTCAAGTCAAGACTCGAAGCCCTTTTTTAG 1488 0.4388 MDGRINAAIESSSGSISRKRKHSVVGFGSEVDSAIRSGTAPNSEVSSVNGFDRAVENDIKSITASNLETPVSVDSFGRTVENAMMSFAPNPPPLYGFAEVVDLAIISHVGFEEDQNETKESPGGTAYQGFPDARRGKEQPAWRVFSLEELKSATNNFKRDNMRGEGGFGSVYWGQLSDGSQIAVKRLYFRSEVTETFTVELEILARIRHKNLLSLRGYCAEGQERLIVYEYMQNLCLHSNLHGHHSLKCPLDWNRRMNIAIGSAEGIAYLHQQATPRIIHRDIKSSNVLLDSDFKARVADFGFAKLIPDGATHVTTKVMGTRGYLAPEYAMLGKAKASCDVYSFGVLLLELASGRRPAKMLNSTVRRSIVDWALPLVCEKKFSEIADPRLNGNYVEEELKRVVLVALMCAQDLPEKRPTMLDVVELLRGESKDKFSHIENSDMFRSRLAADGTSVAEDSLDYILDEKNLEHPLRKNASCFFGIVAIFKSRLEALF* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0079 495 SUPERFAMILY Protein kinase-like (PK-like) 140 427 IPR011009 -
Vra9g0079 495 ProSiteProfiles Protein kinase domain profile. 157 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0079 495 Gene3D Phosphorylase Kinase; domain 1 132 231 - -
Vra9g0079 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672|GO:0006468
Vra9g0079 495 PANTHER BNAA05G14800D PROTEIN 131 471 - -
Vra9g0079 495 Pfam Protein kinase domain 164 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0079 495 MobiDBLite consensus disorder prediction 114 133 - -
Vra9g0079 495 SMART serkin_6 157 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0079 495 PANTHER OS01G0750732 PROTEIN 131 471 - -
Vra9g0079 495 Gene3D Transferase(Phosphotransferase) domain 1 232 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0079 Vra-Chr9 517576 522874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0079 145 462 Trihelix Transcription Factor Family AT1G70460 45.820 2.52e-87 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vra9g0079 Pkinase 2.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0079 - - vun:114167562 772.696