LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra9g0055	ATGAAGCTCACGGTGAAGACTTTGAAAGGCAGCCATTTCGAAATTAGGGTTCAGCCCTCCGACACTGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAGGGCAAAGATAATTACCCGTGTGGACAGCAATTGTTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGTTGAGAACAAAGTCTCTGAAGATGGCTTTCTTGTTGTTATGCTTAGCAAGAGTAAAGCATCAGGTTCTGCTGCAGCTCCATCTGTTCAGCCTGCCAGCAGTCCTGCTACAACTGTATCAACATCCAATTCCAACCCAGCTTCTGATCCTCCAGTGCAGACCCAGGCTGCGAACAACACCACATCTAGCACGGATGCCCCAACTACCAATGTTTCTGCAGACACTTATGGTCAGGCTGCATCGAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATCATGGACATGGGCGGTGGCAATTGGGACAGAGACACTGTTAGTCGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGGGCAATTGATTACTTGTATTCTGGAATCCCTGAAGCAGCAGAAGTTGCCGTGCCAGTTCCTAACTACCCCGGTAGTCAAACAACTGAAACAGCTGGGATTCCTTCTGGAGCAGTTCCTGTAGGACCTAATTCATCTCCTTTAAATATGTTTCCTCAGGAGACAATTTCAAGTACTGGGGCCGGACTTGGATCTCTGGACTTCCTTAGAAATAATCCCCAGTTTCAAGCTTTGCGTTCAATGGTGCAATCCAATCCACAAATTCTCCAGCCTGTGCTTCAGGAACTGGGTAAGCAGAATCCTGGTCTTTTAAGACTGATTCAAGAGCATCACGGGGAGTTTCTCCAGTTGATAAATGAACCTGTTGATGGTTCTGAAGGAGATATATTTGACCAACCTGAGCAAGACATGCCTCATGCCATCAACGTGACTCCAGCTGAGCAGGAGGCAATTGGAAGGCTTGAGGCTATGGGATTTGACAGAGCTTCGGTGATAGAGGCATTTTTGGCATGTGACCGTGACGAGCAATTGGCAGCGAACTACTTATTGGAGAATGCCGGAGACTTTGAAGATTAA	1116	0.4597	MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFLVVMLSKSKASGSAAAPSVQPASSPATTVSTSNSNPASDPPVQTQAANNTTSSTDAPTTNVSADTYGQAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPNYPGSQTTETAGIPSGAVPVGPNSSPLNMFPQETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVDGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED*	372

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vra9g0055	371	PANTHER	UV EXCISION REPAIR PROTEIN RAD23	1	370	-	-
Vra9g0055	371	SUPERFAMILY	UBA-like	145	196	IPR009060	GO:0005515
Vra9g0055	371	Gene3D	-	1	80	-	-
Vra9g0055	371	SMART	uba_6	327	364	IPR015940	-
Vra9g0055	371	SMART	uba_6	148	188	IPR015940	-
Vra9g0055	371	MobiDBLite	consensus disorder prediction	81	132	-	-
Vra9g0055	371	Gene3D	-	141	191	-	-
Vra9g0055	371	Gene3D	-	318	366	-	-
Vra9g0055	371	ProSiteProfiles	Ubiquitin-associated domain (UBA) profile.	325	365	IPR015940	-
Vra9g0055	371	Pfam	Ubiquitin family	3	76	IPR000626	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra9g0055	Vra-Chr9	363006	369406	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra9g0055	1	88	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	35.227	9.93e-06	43.1

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra9g0055	K10839		-	gmx:100819019	661.373

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra9g0055	9	363006	369406	Vra9g0055	9	363006	369406	ECH
	Vra5g1918	5	24983954	24988899	Vra9g0055	9	363006	369406	PCT

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