Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0055 ATGAAGCTCACGGTGAAGACTTTGAAAGGCAGCCATTTCGAAATTAGGGTTCAGCCCTCCGACACTGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAGGGCAAAGATAATTACCCGTGTGGACAGCAATTGTTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGTTGAGAACAAAGTCTCTGAAGATGGCTTTCTTGTTGTTATGCTTAGCAAGAGTAAAGCATCAGGTTCTGCTGCAGCTCCATCTGTTCAGCCTGCCAGCAGTCCTGCTACAACTGTATCAACATCCAATTCCAACCCAGCTTCTGATCCTCCAGTGCAGACCCAGGCTGCGAACAACACCACATCTAGCACGGATGCCCCAACTACCAATGTTTCTGCAGACACTTATGGTCAGGCTGCATCGAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATCATGGACATGGGCGGTGGCAATTGGGACAGAGACACTGTTAGTCGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGGGCAATTGATTACTTGTATTCTGGAATCCCTGAAGCAGCAGAAGTTGCCGTGCCAGTTCCTAACTACCCCGGTAGTCAAACAACTGAAACAGCTGGGATTCCTTCTGGAGCAGTTCCTGTAGGACCTAATTCATCTCCTTTAAATATGTTTCCTCAGGAGACAATTTCAAGTACTGGGGCCGGACTTGGATCTCTGGACTTCCTTAGAAATAATCCCCAGTTTCAAGCTTTGCGTTCAATGGTGCAATCCAATCCACAAATTCTCCAGCCTGTGCTTCAGGAACTGGGTAAGCAGAATCCTGGTCTTTTAAGACTGATTCAAGAGCATCACGGGGAGTTTCTCCAGTTGATAAATGAACCTGTTGATGGTTCTGAAGGAGATATATTTGACCAACCTGAGCAAGACATGCCTCATGCCATCAACGTGACTCCAGCTGAGCAGGAGGCAATTGGAAGGCTTGAGGCTATGGGATTTGACAGAGCTTCGGTGATAGAGGCATTTTTGGCATGTGACCGTGACGAGCAATTGGCAGCGAACTACTTATTGGAGAATGCCGGAGACTTTGAAGATTAA 1116 0.4597 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFLVVMLSKSKASGSAAAPSVQPASSPATTVSTSNSNPASDPPVQTQAANNTTSSTDAPTTNVSADTYGQAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPNYPGSQTTETAGIPSGAVPVGPNSSPLNMFPQETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVDGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0055 371 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 370 - -
Vra9g0055 371 SUPERFAMILY UBA-like 145 196 IPR009060 GO:0005515
Vra9g0055 371 Gene3D - 1 80 - -
Vra9g0055 371 SMART uba_6 327 364 IPR015940 -
Vra9g0055 371 SMART uba_6 148 188 IPR015940 -
Vra9g0055 371 MobiDBLite consensus disorder prediction 81 132 - -
Vra9g0055 371 Gene3D - 141 191 - -
Vra9g0055 371 Gene3D - 318 366 - -
Vra9g0055 371 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 325 365 IPR015940 -
Vra9g0055 371 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Vra9g0055 371 SUPERFAMILY Ubiquitin-like 1 89 IPR029071 -
Vra9g0055 371 Pfam UBA/TS-N domain 327 362 IPR015940 -
Vra9g0055 371 Pfam UBA/TS-N domain 148 186 IPR015940 -
Vra9g0055 371 PRINTS DNA repair protein Rad23 signature 272 294 IPR004806 GO:0006289
Vra9g0055 371 PRINTS DNA repair protein Rad23 signature 321 337 IPR004806 GO:0006289
Vra9g0055 371 PRINTS DNA repair protein Rad23 signature 338 352 IPR004806 GO:0006289
Vra9g0055 371 PRINTS DNA repair protein Rad23 signature 353 368 IPR004806 GO:0006289
Vra9g0055 371 CDD UBA1_Rad23_plant 142 191 - -
Vra9g0055 371 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 370 - -
Vra9g0055 371 SMART CBM 244 287 IPR006636 -
Vra9g0055 371 SMART ubq_7 1 75 IPR000626 GO:0005515
Vra9g0055 371 SUPERFAMILY UBA-like 306 368 IPR009060 GO:0005515
Vra9g0055 371 Pfam XPC-binding domain 246 301 IPR015360 GO:0003684|GO:0006289|GO:0043161
Vra9g0055 371 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 146 189 IPR015940 -
Vra9g0055 371 TIGRFAM rad23: UV excision repair protein Rad23 1 370 IPR004806 GO:0006289
Vra9g0055 371 CDD Ubl_Rad23 1 74 - -
Vra9g0055 371 Gene3D - 236 302 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vra9g0055 371 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Vra9g0055 371 SUPERFAMILY XPC-binding domain 243 309 IPR036353 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0055 Vra-Chr9 363006 369406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0055 1 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 35.227 9.93e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0055 K10839 - gmx:100819019 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0055 9 363006 369406 Vra9g0055 9 363006 369406 ECH
Vra5g1918 5 24983954 24988899 Vra9g0055 9 363006 369406 PCT