Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0054 ATGAAGGAGAAGGGCAAAGAGAAGGAGACAGAGAAGAAGAAGTATCCGATCGGAGCTGAACATTACCTTCTCTACGAAGAGATTGGTCAGGGCGTCAGCGCTTCTGTTCACCGCGCGCTCTGCGTTCCTTTCAACGAGGTCGTCGCCATCAAAATCCTCGACTTCGAACGTGACAATTGCGATCTGAACAACGTGTCTCGCGAGGCGCAGACAATGATCCTCGTGGACCACCCTAACGTGCTCAAATCACACTGCTCCTTCGTCAACGAGCACAATCTGTGGGTGGTCATGCCGTATATGTCCGGCGGCTCGTGCCTCCACATACTCAAAGCCGCTCACCCCGACGGGTTTGAGGAGGTTGTGATTGCGACCATTCTCAAAGAGGTCCTGAAGGGTTTGGAGTACCTTCACCATCACGGCCACATCCACCGCGACGTCAAGGCTGGCAACATTCTCATCGATTCACGCGGCGCCGTCAAGCTTGGCGACTTTGGTGTTTCCGCTTGCCTTTTTGATTCTGGTGACCGCCAACGCACCAGGAATACATTTGTTGGAACTCCTTGCTGGATGGCACCCGAGGTCATGGAGCAACTCCACGGCTACAACTTCAAAGCTGACATCTGGTCATTTGGTATTACCGCCTTGGAGCTTGCTCATGGTCATGCTCCTTTCTCAAAGTATCCACCAATGAAGGTACTGCTCATGACTTTGCAAAACGCACCCCCTGGCCTTGACTACGAAAGGGATAAGAAGTTCTCTAAGTCGTTTAAGCAGATGATTGCTAGCTGCTTGGTAAAAGATCCTTCAAAACGACCCTCTGCAAGCAAGTTGTTAAAGCATTCCTTCTTTAAGCAGGCTCGCTCCAATGATCATATTCGAAGGCTCTTGGAGGGGCTGCCTGCTTTAGGTGATCGAATGGAGGCCCTAAAGAGAAAAGAAGAAGATATGCTCGCACAAAAGAAAATGCCTGATGGTAAGATGGAGGAATTATCACAGAATGAATACAAACGAGGAATCAGTGGCTGGAACTTCAATCTTGAAGATATGAAGGCTCAGGCTTCCTTGATCCATGATTTCGACGATGCTATTACCGATATGAATCATGCAGCAAGTTCAAGTTCTTTAGCTACACTTGATTCACAAGAGAAACCATTACCGAGTGCATTTCACAACCCTTCTCGATCTGTTGATATGGAAGAAAATGATGAGATGCGAAATCAATCAGCTTCTGTTTCTGCAATTGATGCCAAAACTAGGCTTGAAAAATCCGACGATGACTCTTGCATCACCAGTTCGAGCCATGAACCACAAATTAAGTCATCCTGTATCGATAATCACGTGGACAATAATTTGGGTGAGAAATCTGACTTGGAAAACGGTGGAAAATTGGTGGACGGAATGTCCACCCATCATCATCATAGAAGAGGATGTTCATCGAGCATCTTACCAGAAGTTGTCTTTCCACCAATTCGACCAGAAAGTGAGAAACCGCAAAATCTGCTCCAGAACGGTTCAAGTTGCAATGCAACTTCAGTTCCACAGACAGGAGAGGACGTACTTACTGAACTTCCATCAAAAGTCTCAAAATCATCAGCTAATTCTGATGACCCTGATGAGAAATCGAAAGTGCCAGTTGTACAGCAGAGAGGACGTTTTAAGGTTACATCTGAAAATGTTGACCCAGAAAAGGTGGGCCCTTCTCCTGTACTGCAAAAGAGTCATAGCATGCAGGTTTTTAGCCAGCATAATGTTGCTTCTGTACAACAACCAACTTTGCCATTATTACCAGCATATGAAGCCACATCATCAAATCTTTCGGGTCACGCCGTGTTTCCCATATTGCACTCTGTACTGCAGACAAATATTCTGCAACAGGAAAGCATTTTATGTTTAATGAGGCTTATTACTGCCGGTGACTCTACAGCTGATGGCTCATGTACCCTAGCTCAAATAGCAGGAACTGAAAAATCTTTGCTTGAAGCTGCTCAGGAGAGGGAGAAGGAGTTACTTAGTGAGATAACTGATTTGCAATGGAGGCTTATCTGTGCTCAGGAGGAGCTTCAAAAATTGAAAACAGAAAACGCCCAGGTGTGA 2094 0.4618 MKEKGKEKETEKKKYPIGAEHYLLYEEIGQGVSASVHRALCVPFNEVVAIKILDFERDNCDLNNVSREAQTMILVDHPNVLKSHCSFVNEHNLWVVMPYMSGGSCLHILKAAHPDGFEEVVIATILKEVLKGLEYLHHHGHIHRDVKAGNILIDSRGAVKLGDFGVSACLFDSGDRQRTRNTFVGTPCWMAPEVMEQLHGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFKQARSNDHIRRLLEGLPALGDRMEALKRKEEDMLAQKKMPDGKMEELSQNEYKRGISGWNFNLEDMKAQASLIHDFDDAITDMNHAASSSSLATLDSQEKPLPSAFHNPSRSVDMEENDEMRNQSASVSAIDAKTRLEKSDDDSCITSSSHEPQIKSSCIDNHVDNNLGEKSDLENGGKLVDGMSTHHHHRRGCSSSILPEVVFPPIRPESEKPQNLLQNGSSCNATSVPQTGEDVLTELPSKVSKSSANSDDPDEKSKVPVVQQRGRFKVTSENVDPEKVGPSPVLQKSHSMQVFSQHNVASVQQPTLPLLPAYEATSSNLSGHAVFPILHSVLQTNILQQESILCLMRLITAGDSTADGSCTLAQIAGTEKSLLEAAQEREKELLSEITDLQWRLICAQEELQKLKTENAQV* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0054 697 MobiDBLite consensus disorder prediction 496 518 - -
Vra9g0054 697 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 11 696 - -
Vra9g0054 697 SUPERFAMILY Protein kinase-like (PK-like) 20 284 IPR011009 -
Vra9g0054 697 MobiDBLite consensus disorder prediction 430 448 - -
Vra9g0054 697 MobiDBLite consensus disorder prediction 374 477 - -
Vra9g0054 697 Pfam Protein kinase domain 25 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0054 697 MobiDBLite consensus disorder prediction 532 546 - -
Vra9g0054 697 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Vra9g0054 697 ProSiteProfiles Protein kinase domain profile. 22 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0054 697 Coils Coil 659 697 - -
Vra9g0054 697 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 11 696 - -
Vra9g0054 697 MobiDBLite consensus disorder prediction 489 546 - -
Vra9g0054 697 MobiDBLite consensus disorder prediction 449 472 - -
Vra9g0054 697 Gene3D Phosphorylase Kinase; domain 1 10 98 - -
Vra9g0054 697 CDD STKc_OSR1_SPAK 20 283 - -
Vra9g0054 697 MobiDBLite consensus disorder prediction 374 388 - -
Vra9g0054 697 Gene3D Transferase(Phosphotransferase) domain 1 103 335 - -
Vra9g0054 697 SMART serkin_6 22 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0054 Vra-Chr9 350974 358406 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0054 11 679 MAP Kinase Kinase Kinase Kinase AT1G79640 65.492 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vra9g0054 Pkinase 5.3e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0054 K08835 - gmx:100780339 1211.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0054 9 350974 358406 Vra9g0054 9 350974 358406 ECH