Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0052 ATGAGGCCGATGCAACTCCCACCGCCTTCTGCCTCCGGCTCCGCCTCTGCTCCGCCGCCTACCAACAACAAGGATCACCGTCCCCAGAGACGCCGCAAGGATCTCACGCTGCCGCTGCCGCAGCGTGATACTAATTTGGCGGTGCCGCTTCCTCTTCCGCCATCCACGGCTCCGCCTGCGGCCAGCGGAGGAGCCAGCCAACAGCAGCAGCAGCAGCAGCAGGTGATCCCGTTTTCGGAGCTGGAGAGACTGAACCGCATCGGGAGCGGGAGCGGGGGGACGGTGTACAAGGTTGTGCACCGAACTAGCGGGCGCGTGTACGCGCTGAAGGTGATATACGGACACCACGAGGAGTCCGTGAGGCGGCAGATCCACCGGGAAATCCAGATCCTGCGGGACGTGGACGATGCGAACGTGGTGAAGTGTCACGAGATGTACGATCAGAACAGCGAAATCCAGGTGCTTCTGGAGTTCATGGACGGGGGATCTCTGGAGGGGAAACACATCCCGCACGAACAGCAGCTGGCAGATCTGTCCAGGCAGATTCTTCGGGGGCTGGCGTACCTGCACCGGCGGCACATCGTGCACAGGGACATCAAGCCCTCGAATCTGCTGATAAACTCGCGGAAGCAGGTGAAGATCGCGGATTTCGGGGTGGGTCGGATTCTGAACCAGACCATGGATCCGTGCAATTCTTCGGTGGGGACGATCGCCTACATGAGTCCGGAGAGGATCAACACGGACATAAACGATGGCCAATACGACGCTTACGCGGGGGACATATGGAGCTTTGGGGTTAGCATATTGGAGTTCTACATGGGCAGATTTCCCTTCGCAGTTGGGAGGCAGGGCGATTGGGCCAGCCTCATGTGCGCTATCTGTATGTCTCAGCCACCCGAGGCTCCTCCCTCTGCCTCCCTCCACTTCAGGGATTTCATCTCTAGGTGCCTCCAGCGGGATCCCTCTCGCCGATGGTCTGCCTCAAGGTTGCTGGAACATCCTTTCATGCTCCTCCCCACTCCAACCACAATCAGCTTCCTCCCAATCTCCACCAGCTCCTACCCCCTCCTCCTCCCAGGCCTCTTCCCTCCTAGCAACCCAACCTGA 1107 0.5998 MRPMQLPPPSASGSASAPPPTNNKDHRPQRRRKDLTLPLPQRDTNLAVPLPLPPSTAPPAASGGASQQQQQQQQVIPFSELERLNRIGSGSGGTVYKVVHRTSGRVYALKVIYGHHEESVRRQIHREIQILRDVDDANVVKCHEMYDQNSEIQVLLEFMDGGSLEGKHIPHEQQLADLSRQILRGLAYLHRRHIVHRDIKPSNLLINSRKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSFGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPPSASLHFRDFISRCLQRDPSRRWSASRLLEHPFMLLPTPTTISFLPISTSSYPLLLPGLFPPSNPT* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0052 368 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 27 337 - -
Vra9g0052 368 SMART serkin_6 81 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0052 368 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Vra9g0052 368 SUPERFAMILY Protein kinase-like (PK-like) 78 353 IPR011009 -
Vra9g0052 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vra9g0052 368 Pfam Protein kinase domain 82 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0052 368 Gene3D Phosphorylase Kinase; domain 1 60 160 - -
Vra9g0052 368 MobiDBLite consensus disorder prediction 24 38 - -
Vra9g0052 368 CDD PKc_MAPKK_plant_like 79 336 - -
Vra9g0052 368 Gene3D Transferase(Phosphotransferase) domain 1 163 343 - -
Vra9g0052 368 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 27 337 - -
Vra9g0052 368 MobiDBLite consensus disorder prediction 1 74 - -
Vra9g0052 368 MobiDBLite consensus disorder prediction 60 74 - -
Vra9g0052 368 ProSiteProfiles Protein kinase domain profile. 81 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0052 Vra-Chr9 340521 343705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0052 1 342 MAP Kinase Kinase Gene Family AT1G51660 68.946 4.74e-167 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vra9g0052 Pkinase 4.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0052 K13413 - gmx:100818488 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0052 9 340521 343705 Vra9g0052 9 340521 343705 ECH