Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0050 ATGGCTTCCACCAAAGTAGACGGAAAGAGCATTGGCATTGACCTTGGCACCACCTACAGTTGCGTGGGCGTCTGGCAAAACGATCGCGTTGAGATCATAGCCAATGACCAGGGCAACAGAACCACACCATCCTACGTGGCATTCACCGACACCGAGCGTCTCATCGGAGATGCTGCCAAGAACCAGGTTGCCATGAACCCGCAGAACACCGTGTTCGATGCCAAGCGCCTCATCGGGCGCAGGTTTTCGGACCCTTCAGTGCAGGCCGACATGAAACACTGGCCCTTTAAGGTTGTCCCCGGTCCCGCCGAGAAGCCCATGATCGTCGTGAGCTACAGAGGCGAAGAGAAACAGTTCGCGGCGGAGGAGATTTCATCGATGGTGTTGACGAAGATGAAGGAGATCGCGGAGGCTTACCTTGGACAGAGCGTGAAGAACGCCGTCATCACTGTCCCTGCCTACTTCAACGACTCTCAGAGGCAAGCGACGAAGGACGCCGGTGCCATTGCCGGGCTTAACGTGATGAGAATCATCAACGAGCCAACCGCTGCTGCCATTGCCTATGGATTAGACAAGAAGGGTTCGAGGAGTGGCGAAAAGAATGTGCTTATCTTCGACCTTGGTGGCGGAACATTCGATGTGTCGCTCCTCACCATTGAGGAAGGCATTTTCGAAGTCAAGGCCACTGCCGGAGACACTCATTTGGGAGGTGAAGATTTTGACAACAGGCTTGTGAACCACTTTGTGGCTGAGTTCAAGAGGAAACACAAGAAGGATATTAGCAGCAGTGCGAGAGCTCTAAGGAGATTAAGGACTGCGTGTGAGAGAGCTAAGAGGACTCTGTCATCGACTTCTCAAACAACCATCGAGATTGACTCTCTCTACGAAGGTATTGACTTCTATTCCACCATCACCAGAGCCAGGTTTGAGGAACTCAACATGGACTTGTTCCGCAAGTGCATGGAACCTGTTGAGAAGTGTTTGAGGGACTCCAAGATCGACAAGAGTCACGTCCACGACGTTGTCCTTGTTGGGGGATCCACCAGGATTCCAAAAGTGCAACAACTGTTGCAGGATTTCTTCAACGGGAAAGAGCTTTGCAAGAGCATTAACCCCGACGAGGCTGTGGCATACGGTGCTGCAGTGCAGGCTGCTATTTTGAGCGGCGAAGGGAACGAGAAGGTCCAGGACTTGCTTCTTCTTGACGTTACTCCTCTTAGCCTCGGGATTGAAACTGCCGGGGGTGTGATGACAGTGTTGATTCCGAGGAACACGACGATTCCCACCAAGAAGGAGCAGATTTTCTCTACTTACGCTGATAATCAACCGGGAGTGCTCATACAGGTGTACGAAGGTGAGAGGGCAAGGACCAAAGACAACAACCTGTTGGGGAAGTTTGAACTCGCTGGCATCCCTCCGGCCCCTAGAGGAGTTCCTCAAATCAATGTGTGTTTTGACATTGACGCAAATGGGATTTTGAATGTTTCGGCTGAGGACAAGACTGCAGGGGTGAAGAACAAGATCACGATCACCAATGATAAGGGAAGGCTGAGCAAGGAGGATATTGAGAGAATGGTGCAGGAGGCTGAGAGATACAAGGCAGAGGATGAGGATGTTAAGAAGAAGGTGGAGGCCAAGAACTCGTTGGAGAACTATGCTTACAACATGAGGAATACCGTGAAGGATGAGAAGTTTGCAGGAAAACTGAACCCTGCTGATAAGCAGAAGATAGAGAAGGCCATTGATGAGACGATTGAATGGCTTGACGGGAACCAACTAGCTGAGGTGGAGGAATTTGAGGACAGATTAAAGGATTTGGAGGGACTGTGCAACCCAATTATCTCAAAGATGTATCAAGGGAGTGCTGCAGATGTGCCAATGGGAGGTACAGATGACATTCCTAATGGTGCTGGCTATGCAAAATCATCAACTGCTGGTGCTGGACCTAAGATCGAAGAAGTTGACTGA 1968 0.5066 MASTKVDGKSIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQADMKHWPFKVVPGPAEKPMIVVSYRGEEKQFAAEEISSMVLTKMKEIAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKGSRSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDISSSARALRRLRTACERAKRTLSSTSQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSHVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGIETAGGVMTVLIPRNTTIPTKKEQIFSTYADNQPGVLIQVYEGERARTKDNNLLGKFELAGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEDIERMVQEAERYKAEDEDVKKKVEAKNSLENYAYNMRNTVKDEKFAGKLNPADKQKIEKAIDETIEWLDGNQLAEVEEFEDRLKDLEGLCNPIISKMYQGSAADVPMGGTDDIPNGAGYAKSSTAGAGPKIEEVD* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0050 655 Coils Coil 522 546 - -
Vra9g0050 655 Gene3D - 547 620 IPR029048 -
Vra9g0050 655 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 5 630 - -
Vra9g0050 655 Gene3D - 72 127 - -
Vra9g0050 655 Pfam Hsp70 protein 11 619 IPR013126 GO:0005524|GO:0140662
Vra9g0050 655 SUPERFAMILY Actin-like ATPase domain 198 389 IPR043129 -
Vra9g0050 655 PANTHER HEAT SHOCK PROTEIN 70KDA 5 630 IPR013126 GO:0005524|GO:0140662
Vra9g0050 655 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 393 550 IPR029047 -
Vra9g0050 655 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 544 621 IPR029048 -
Vra9g0050 655 Gene3D - 193 367 - -
Vra9g0050 655 ProSitePatterns Heat shock hsp70 proteins family signature 1. 13 20 IPR018181 -
Vra9g0050 655 ProSitePatterns Heat shock hsp70 proteins family signature 2. 204 217 IPR018181 -
Vra9g0050 655 PRINTS 70kDa heat shock protein signature 9 22 - -
Vra9g0050 655 PRINTS 70kDa heat shock protein signature 37 49 - -
Vra9g0050 655 PRINTS 70kDa heat shock protein signature 59 67 - -
Vra9g0050 655 PRINTS 70kDa heat shock protein signature 147 167 - -
Vra9g0050 655 PRINTS 70kDa heat shock protein signature 210 220 - -
Vra9g0050 655 PRINTS 70kDa heat shock protein signature 338 354 - -
Vra9g0050 655 PRINTS 70kDa heat shock protein signature 370 390 - -
Vra9g0050 655 PRINTS 70kDa heat shock protein signature 397 416 - -
Vra9g0050 655 PRINTS 70kDa heat shock protein signature 478 494 - -
Vra9g0050 655 CDD HSPA1-2_6-8-like_NBD 10 388 - -
Vra9g0050 655 Gene3D Actin; Chain A, domain 4 236 319 - -
Vra9g0050 655 ProSitePatterns Heat shock hsp70 proteins family signature 3. 341 355 IPR018181 -
Vra9g0050 655 Gene3D - 11 385 - -
Vra9g0050 655 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 392 546 IPR029047 -
Vra9g0050 655 SUPERFAMILY Actin-like ATPase domain 9 192 IPR043129 -
Vra9g0050 655 MobiDBLite consensus disorder prediction 628 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0050 Vra-Chr9 330177 332552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0050 9 655 Calmodulin-binding Proteins AT1G16030 86.090 0.0 1164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0050 K03283 - pvy:116132160 1176.77