Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0043 ATGTTTGACTCTGGTTACAAGTCACAGTATATTGGAGGCCAGAAGGAGAAGTTCGTAAGGTTGGATGATCTGGATTCGAATTTGTCGTATCCATCAAGCTCAAGTGGGATGAAAAAATTAAGGTTCAATTTAGATTCTCTTCCAATTCCTGGTCGTGGAAAAAAAAGAGCATCGAAATCGTTTAAGCTAGGAGTGAAGAAGGGTTCGGATGGACTAAAAACATTTGGAAGATCACTCAAGAGTGGGGTGACTACATGGGCAGTGTTCCCTGAAGACCTTAAAGTTTCAGAGAAAAAAGTGTTTGATCCTCAAGACAAGACCCTTCTGTATTGGAACAAGTTTTTTGAGATTCTATGTATTTTTTCTGTGGCTTGTGATCCCTTCTTCTTTTATCTTCCTTATTTCAACCACAAATCATTTTGCCTCGCCATAGATAATGAGCTAGCAAGTTTTGCTGTCACATTGAGAACAATATGCGATGCCGTTTATCTCATCCGCATAAGTTTTCAGTTCCGCACTGCTTACATTGCACCATCATCTCGGGTATTTGGACGAGGTGAACTTGTCATAGATCCTACACAGATTGCTAAGAGATACTTACGACGTTATTTCATCATTGACTTCGTTTCTGTGCTCCCTATACCACAGATTGTAGTGTGGAAATATCTTTACAGATCAGGACGTGTAAAGGTCTTGGAAACAAAAACGTTACTGCTGAGAATTGTGATCCTGCAATATTTTCCAAGATTTATACGTTTTTTACCTTTAGCATCTGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAGAACGCACTGCTCGGGGCCATGTACTATTTGATATGGTATATGCTTGCTAGTCACGTAAGTTTCAACTCTTAA 879 0.3925 MFDSGYKSQYIGGQKEKFVRLDDLDSNLSYPSSSSGMKKLRFNLDSLPIPGRGKKRASKSFKLGVKKGSDGLKTFGRSLKSGVTTWAVFPEDLKVSEKKVFDPQDKTLLYWNKFFEILCIFSVACDPFFFYLPYFNHKSFCLAIDNELASFAVTLRTICDAVYLIRISFQFRTAYIAPSSRVFGRGELVIDPTQIAKRYLRRYFIIDFVSVLPIPQIVVWKYLYRSGRVKVLETKTLLLRIVILQYFPRFIRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHVSFNS* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0043 292 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 289 - -
Vra9g0043 292 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 12 289 - -
Vra9g0043 292 Pfam Ion transport protein 110 289 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vra9g0043 292 SUPERFAMILY Voltage-gated potassium channels 102 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0043 Vra-Chr9 303569 306061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0043 6 289 Ion Channels AT1G15990 61.538 1.78e-114 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0043 K05391 - vra:111242542 574.704