Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0042 ATGTCACAGATAACCGGCTCTTGCTGGTACTTACTAGCCATTGAACGTAATGACACCTGCTGGAAGAATGCTTGTAAAGCAGTTGAAGGGTGCAGTACACATTTCTTGTACTGTGCGAATTCGAACAAGCATCTGCCAGGGTATGACAGTTGGAGAAATGTTAGCGAAACTGTTCTGAAAAGTCAGTGCTATGTGGAGGATGGTTCCTCAGAATTTAGCTATGGCATCTTCTCTCAAGCTATAGAGTCTGATATTGTTGCTTCCATAGAAGTTTTTCCTAAGTTCTGTTACTGTTTATGGTGGGGACTTCAAAACTTGAGTACACTTGGTCAGGGGCTTCTAACCAGTACATACCCTGCAGAGGTTATGTTTTCCATAGTAATAGCTATCGCGGGGCTTATCCTTTTTGCTCTTCTGATCGGAAACATGCAGACCTACCTTCAATCAATGTCAGTTCGCCTTGAGGAAATGAGGATCAAAAGACGTGACTCTGAGCAATGGATGCATCATCGTTTGCTTCCTCCAGAGCTAAGGGAAAGAGTGAGACGATATGACCAATACAAGTGGCTGAACACCCGTGGAGTAGATGAAGAGAGCATAGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGGCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCCAACATGGATGAACGTTTGCTTGATGCTATATGTGAGCGATTGAAGCCTAGTTTATATACAGAGGGAACTTACATAGTGAGGGAAGGGGACCCAGTTAATGAGATGCACTTCATCATACGTGGGCGTCTAGAGAGTGTCACCACAGATGGTGGAAGAAGTGGGTTCTTCAACAGAGGTCTTCTGAAGGAAAATGACTTCTGTGGAGAGGAGCTACTAACGTGGGCATTGGACCCCAAATCTGGTTCTAACTTGCCATCATCAACAAGAACTGTGAAGGCTATAAATGAGGTGGAGGCATTTGCTTTGGAAGCAGAGGAGTTAAAGTTTGTTGCTTCCCAGTTTAGGCACATCCACAGCAGACAGGTTCAGCACACCTTCCGTTTCTATTCACAGCAGTGGAGAACGTGGGCTGCTATCTACATTCAAGCTGCATGGAGGCGGCATTGCAGGAGGAAGATAGCAGAACAGCGCAGGAGGGAGGAAGAAGAATTATATGACTCTGATTATGACAACAGTGACGATTCTGCAAAAGCCTTGGTCAAGCATCCTGAAAAGTCTGCTTTTCCCTCTTCTAACCTTGGACTTGCTACAACCGTCTATGCATCTCGCTTTGCTGCAAATGCACTTCGTGGTCATAGGCGTCGTGATTCAAGTTCCAAGGACATACTCAAACTCCAAAAGCCCCCAGAACCTGACTTCAGTGATTATGATGAAAACTGA 1404 0.4487 MSQITGSCWYLLAIERNDTCWKNACKAVEGCSTHFLYCANSNKHLPGYDSWRNVSETVLKSQCYVEDGSSEFSYGIFSQAIESDIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPAEVMFSIVIAIAGLILFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMHFIIRGRLESVTTDGGRSGFFNRGLLKENDFCGEELLTWALDPKSGSNLPSSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHCRRKIAEQRRREEEELYDSDYDNSDDSAKALVKHPEKSAFPSSNLGLATTVYASRFAANALRGHRRRDSSSKDILKLQKPPEPDFSDYDEN* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0042 467 ProSiteProfiles IQ motif profile. 362 391 IPR000048 GO:0005515
Vra9g0042 467 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 2 464 - -
Vra9g0042 467 Gene3D - 4 151 - -
Vra9g0042 467 Gene3D Jelly Rolls 224 344 IPR014710 -
Vra9g0042 467 MobiDBLite consensus disorder prediction 437 467 - -
Vra9g0042 467 Pfam Ion transport protein 5 153 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vra9g0042 467 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 464 - -
Vra9g0042 467 MobiDBLite consensus disorder prediction 437 461 - -
Vra9g0042 467 Gene3D Helix hairpin bin 153 217 - -
Vra9g0042 467 SUPERFAMILY cAMP-binding domain-like 156 346 IPR018490 -
Vra9g0042 467 SUPERFAMILY Voltage-gated potassium channels 87 189 - -
Vra9g0042 467 Pfam Cyclic nucleotide-binding domain 247 336 IPR000595 -
Vra9g0042 467 CDD CAP_ED 226 357 IPR000595 -
Vra9g0042 467 ProSiteProfiles cAMP/cGMP binding motif profile. 226 356 IPR000595 -
Vra9g0042 467 SMART cnmp_10 226 357 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0042 Vra-Chr9 301498 303518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0042 2 461 Ion Channels AT1G15990 72.961 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0042 K05391 - gmx:100810453 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0042 9 301498 303518 Vra9g0042 9 301498 303518 ECH