Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0035 ATGGATTGTTCATCATGGATTAACACTTCCTTGGATCTCAACATTAATCCTCACAGAGTTCATCAAGAACTTCCCAAGGAGGTAGAAAGCAAGCTTTTTTCTTTGGGAATGCCCAAGTTTAACGTGGAAGAATGTTGGGAATCCAAAAGACCCATCAAAGATGAGTCTAACAGTGACTTGGAGGAGGAACTGAAGCGGGTGACAGCAGAAAACAAGAAGTTGGCTGAGATGCTGTCGGTGGTGTGTGAGAACTACAACACTTTGCGAAGCCATTTGATGGAATATACGAGGAAAAATGGTGAAAAAGAGACCAGCCCGACATCAAAGAAAAGGAAGTCTGAAAGCAGCAACAACAATAGTATTTGTGTGATGGGAACTAACAATGGAAACTCCGAGAGCAGCTCCACTGATGAAGAATCTTGCAAGAAACCGAGGGAAGAAACCATGAAACCAAAAATTTCAAGAGTTTATGTCAGGACCGAAGCATCTGACACCACCCTTATTGTGAAAGATGGGTACCAGTGGAGGAAATATGGGCAAAAAGTGACCAGAGATAACCCTTGTCCAAGAGCATATTTCAAATGCTCATTTGCTCCAAGCTGCCCTGTAAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTGGCTACTTATGAAGGGGAGCACAACCATCCCCAAGCTTCTTCACAAATGGAGGCAACATCAGGTTCTGGGCGTAGTGTGACCCTTGCTTCAGTGCCTTGTGCAGCTGCCACTCCAACACTCGTTACCCTTGACTTGACAAAATCTAAGGGCAGCAACGATTCCAAGAGCACGAAAACTAAAGTAGATACACCTAAAGTGCAGCAGGTTTTGGTGGAACAGATGGCAACTTCTTTGACCACGGATCCTAATTTCAGAGCAGCACTTGTTGCTGCCATCTCAGGAAGATTGATGCACAATAATTGA 957 0.441 MDCSSWINTSLDLNINPHRVHQELPKEVESKLFSLGMPKFNVEECWESKRPIKDESNSDLEEELKRVTAENKKLAEMLSVVCENYNTLRSHLMEYTRKNGEKETSPTSKKRKSESSNNNSICVMGTNNGNSESSSTDEESCKKPREETMKPKISRVYVRTEASDTTLIVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPQASSQMEATSGSGRSVTLASVPCAAATPTLVTLDLTKSKGSNDSKSTKTKVDTPKVQQVLVEQMATSLTTDPNFRAALVAAISGRLMHNN* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0035 318 Coils Coil 57 77 - -
Vra9g0035 318 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 318 IPR044810 GO:0003700
Vra9g0035 318 Pfam WRKY DNA -binding domain 170 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra9g0035 318 SMART WRKY_cls 169 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra9g0035 318 MobiDBLite consensus disorder prediction 111 135 - -
Vra9g0035 318 SUPERFAMILY WRKY DNA-binding domain 165 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra9g0035 318 MobiDBLite consensus disorder prediction 95 110 - -
Vra9g0035 318 PANTHER TRANSCRIPTION FACTOR 1 318 - -
Vra9g0035 318 ProSiteProfiles WRKY domain profile. 164 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra9g0035 318 MobiDBLite consensus disorder prediction 95 148 - -
Vra9g0035 318 Gene3D WRKY domain 153 230 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0035 Vra-Chr9 268100 270194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0035 4 318 WRKY Transcription Factor Family AT1G80840 52.584 3.57e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra9g0035 WRKY 3.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0035 - - gmx:100807966 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0035 9 268100 270194 Vra9g0035 9 268100 270194 ECH