Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0033 ATGGATCCGCAGAACGAATCCGACCAAGCAAACCCCAGAAACATAATCTTCGGTAAATACGAGATGGGGCGGGTGCTGGGGCAGGGAAACTTCGCCAAGGTCTACTACGGCAGAAACCTCGTCACTAACGACAACGTCGCCGTCAAGGTCATAAAGAAAGAGAAGCTGAAGAAAGAGCGACTGGTGAAGCAGATCAAGCGCGAGGTTTCTGTCATGAAACTGGTGCGGCATCCCCACATCGTTCAACTCAAGGAAGTCATGGCCACCAAAGGAAAAATCTTCCTCGTCATGGAATACGTTAAGGGCGGCGAGCTCTTCACCAAAGTCAACAAAGGAAAACTCTCCGAAGACCTCGCCAGAAAGTACTTCCAGCAACTTATCAGCGCCGTCGACTACTGCCACAGCCGCGGCGTCACCCACCGCGACCTCAAGCCGGAGAATCTCCTCTTGGACCAGAACGAGGACCTCAAAGTCTCCGACTTTGGACTCTCGGCGCTGCCGGAGCAGCGCCGCGCCGACGGCATGCTATTAACGCCGTGTGGGACCCCTGCTTACGTGGCGCCGGAGGTTCTGAAGAAAAAGGGCTACGACGGTTCAAAGGCCGATATATGGTCCTGTGGGGTAATTCTTTACGCCTTGCTCTGCGGCTATTTACCCTTCCAAGGTGAGAATGTTATGAGAATCTACCGAAAAGCGTTCAGAGCTCAGTATGAATTACCGGAATGGGTTTCGTCGCAGGCCAAAAATCTCATTTCGAATCTCCTCGTTGCTGATCCTGCCAAGAGGTATTCCATTCCCGATATAATGAAGGATCCATGGTTTCAATTCGGGTTCATGAGACCCATTGCCTTTTCGATTAAGGAATCCGAGGTAGAAGACAACATTGATTTCGAAGATGTGGACAACAACGAGGACGAGGTCTCGATGAGGAAACCCGCGAGGCCGTTTTACAACGCGTTTGAGATAATCTCGTCCTTGTCGCACGGGTTTGATCTCAGGAGTTTGTTTGAGACGAGGAAGCGGTCGCCGTCTATGTTCATCTGTAAATTTTCGGCTTCGGCGGTGATGGCGAAGGTGGAGGCTGCTGCAAAGAAGCTGAATTTTAAAGTTACGGGGAAGAAGGAGTTCGTGGTGAGGATGCAGGGGGCGGAAGAGGGGAGGAAGGGGAAGTTGGGGATGACGGTGGAGGTTTTCGAGGTGGCGCCGGAGGTGGCGGTGGTTGAGTTTTCAAAGTCTGGCGGCGACACTTTGGAGTATATTAAACTGTGTGAGGAACAAATAAGACCATCTCTGAAAGACATTGTTTGGAGCTGGCAGGGTGATAGCAACAATTAG 1335 0.5154 MDPQNESDQANPRNIIFGKYEMGRVLGQGNFAKVYYGRNLVTNDNVAVKVIKKEKLKKERLVKQIKREVSVMKLVRHPHIVQLKEVMATKGKIFLVMEYVKGGELFTKVNKGKLSEDLARKYFQQLISAVDYCHSRGVTHRDLKPENLLLDQNEDLKVSDFGLSALPEQRRADGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYALLCGYLPFQGENVMRIYRKAFRAQYELPEWVSSQAKNLISNLLVADPAKRYSIPDIMKDPWFQFGFMRPIAFSIKESEVEDNIDFEDVDNNEDEVSMRKPARPFYNAFEIISSLSHGFDLRSLFETRKRSPSMFICKFSASAVMAKVEAAAKKLNFKVTGKKEFVVRMQGAEEGRKGKLGMTVEVFEVAPEVAVVEFSKSGGDTLEYIKLCEEQIRPSLKDIVWSWQGDSNN* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0033 444 PANTHER - 11 443 - -
Vra9g0033 444 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0033 444 Gene3D Kinase associated domain 1, KA1 320 437 - -
Vra9g0033 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vra9g0033 444 ProSiteProfiles NAF domain profile. 312 337 IPR018451 GO:0007165
Vra9g0033 444 Gene3D Transferase(Phosphotransferase) domain 1 12 319 - -
Vra9g0033 444 PANTHER CBL-INTERACTING PROTEIN KINASE 16 11 443 - -
Vra9g0033 444 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Vra9g0033 444 Coils Coil 48 68 - -
Vra9g0033 444 CDD CIPK_C 318 432 - -
Vra9g0033 444 SUPERFAMILY Protein kinase-like (PK-like) 16 307 IPR011009 -
Vra9g0033 444 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0033 444 Pfam NAF domain 316 371 IPR004041 GO:0007165
Vra9g0033 444 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0033 Vra-Chr9 256179 258122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0033 13 444 CBL-interacting serine-threonine protein kinases AT5G10930 62.045 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vra9g0033 Pkinase 9.1e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0033 - - vun:114167214 794.267