Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0032 ATGAGTGTGACAGGTTCATCTTCTGGGCACCCTCAATTCATTGCCAGCACTGGTAACAGAAGCTTGTCCAATGCGCCCCTGATTGAGAATCCAGACTCTGATCAAATTGTTGTACCTGATAGAACAAGCTGGAAAAACTTATTTGCATACGTGGGGCCTGGTTTTCTTGTTTCCATTGCATATATCGACCCTGGAAACTTTGAAACGGATCTTCAATCAGGAGCTCAATACAAATACGAGTTGCTATGGATCATATTGGTGGCGTCATGTGCTGCTCTTCTAATTCAAACAATGGCTGCTAATCTTGGGGTTGTCACTGGAATGCATCTAGCTGAGCATTGTAGAGCTGAATATTCTCGACTCCCCAACTTCATCCTTTGGGTGATTGCTGAAATTGCCATAGTGGCCTGTGACATTCCTGAAGTAATTGGAACGGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTCTGACAGGACTCAGTACATTGGTCCTCTTAGCATTACAGCAATATGGGGTTAGGAAACTTGAATTCTTCATTGCATTACTAGTATTTACAATTGCTGGTTGCTTTATGGCTGAGCTTGGATACGCAAAGCCTGTGGCCAAAGAAGTTGTGACAGGTCTATTTGTTCCAAAACTTAATGGGAATGGAGCCACTGGTCTTGCAATTTCACTGCTTGGGGCAATGGTTATGCCACACAATCTCTTCCTCCACTCAGCTCTTGTGCTTTCCAGGAAAATACCCCGATCAGTTCGTGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTGCGGTGGCCTTCCTCATAAATATTTCCGTTATTTCTGTAAGTGGTGCAGTTTGCCATTCTTCAAATTTAAGCGCTGAAGATCAGAAAAGTTGTGAGGATTTGGATTTGAACAAAGCCTCCTTTTTATTAAGGAATGTCTTGGGCAAATGGAGTTCAAAACTATTTGCAATTGCTTTGCTTGCCTCAGGTCAAAGTTCTACCATAACAGGAACATATGCAGGGCAATACGTCATGCAGGGATTTCTTGATCTGCGACTGAAGTCATGGATTCGAAATCTGCTAACTAGATGCTTAGCCATTGTTCCTAGTTTGATTGTTGCACTCATAGGTGGCTCTGCTGGAGCTGGAGAGCTCATCATAATTGCATCAATGATCTTATCATTTGAACTTCCTTTTGCTCTGATTCCACTCCTCAAGTTCACTAGCAGCAAAATCAAGATGGGAGAACATGTCAACTCAATCACGATTTCGGCTGTTACTTGGATCATTGGTTCACTCATCATGGGCATAAACATATACTATTTAATGACTAGCTTTGTGAAGTTGCTTCTTCATGCTCACATAAGAATTGTGGCTAAGGTATTTCTGGGGATATTAGGATTTTCTGGTGTGGCACTGTACATTGGAGGCATTGCATATTTAGTGTTTCGCAAAAATAAAAAGACTACACATGTTTTGACACTTAGAACATTGGAAGATCAGCAAATGGGTAATACAGAAGGTGATGTATCAATGTATAGTCTGCCAAGAGAAGACATAGTAAGCATGCAATTGCCTCAGAAAAGGAGTCCTGCAGAATTTGATTAA 1635 0.4153 MSVTGSSSGHPQFIASTGNRSLSNAPLIENPDSDQIVVPDRTSWKNLFAYVGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALLIQTMAANLGVVTGMHLAEHCRAEYSRLPNFILWVIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLVLLALQQYGVRKLEFFIALLVFTIAGCFMAELGYAKPVAKEVVTGLFVPKLNGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALAVAFLINISVISVSGAVCHSSNLSAEDQKSCEDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKSWIRNLLTRCLAIVPSLIVALIGGSAGAGELIIIASMILSFELPFALIPLLKFTSSKIKMGEHVNSITISAVTWIIGSLIMGINIYYLMTSFVKLLLHAHIRIVAKVFLGILGFSGVALYIGGIAYLVFRKNKKTTHVLTLRTLEDQQMGNTEGDVSMYSLPREDIVSMQLPQKRSPAEFD* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0032 544 Hamap Divalent metal cation transporter MntH [mntH]. 31 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra9g0032 544 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra9g0032 544 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra9g0032 544 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra9g0032 544 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra9g0032 544 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra9g0032 544 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra9g0032 544 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra9g0032 544 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra9g0032 544 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 11 543 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra9g0032 544 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 421 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra9g0032 544 PANTHER METAL TRANSPORTER NRAMP1 11 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0032 Vra-Chr9 238262 243290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0032 15 537 Inorganic Solute Cotransporters AT1G15960 78.476 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0032 K21398 - gmx:100815628 977.237