Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0026 ATGGATAGCGAGGAAGTCTCATCAGTACCTTCCACACCTGCAACACCAGGGGCCCCTCTTTTTGGTGGCAACCTCAGGTTTGAGAAACCTAATGTTTCAAGGAAATCGTCCTTTCTCAGAAGTTGCAAATGCTTTAGTACTGTTGAACAGTGGACCTTGGAAGATGGAGCCAAGCCTAGAGTTTCTTGCTCTTTACCATCCCCTCCCATCCCCCTAGCAAAAAAGGTTGGAGCTGAGTTTATTGGCACGTTCATTCTCATGTTTGCTGCTATTGGCACTGCTATTGTGAACCAAAAGACTCATGGCTCGGAGACTCTGATTGGATGTGCTGCAGCAAATGGACTTGCTGTCATGATCATCATTTTCTCCACTGGTCATATTTCTGGAGCTCATCTCAACCCCGCTGTCACCATTTCCTTCGCTGCATTGAAGCACTTTCCGTGGAAGAATGTGCCAGTGTACATTGGTACACAAGTTTTAGCATCAGTAAGTGCTGCATTTGCTCTGAAGGTGGTTTTTCATCCCTTCATGAGCGGTGGAGTGACGGTCCCTTCAGTAGGATATGGGCAAGCTTTCGCCACAGAGTTCATTGTCAGCTTTATTCTGATGTTTGTTGTCACTGCAGTGGCCACCGATACAAGAGCTGTGGGAGAGCTTGCAGGAATCGCAGTGGGAGCCACGGTGATGCTCAACATACTTATTGCAGGGCCAGCAACTGGAAGTTCAATGAACCCTGTTAGAACATTGGGTCCAGCCATTGCTGCAAACAACTACAAGGGCATATGGGTGTATCTCATTGCTCCCATATTTGGAACTCTGTGTGGGGCAGGTGCCTACACTGTGGTCAAGCTGCCCGAGGAAGAGGCAACAAAAACCACCTCCTAA 885 0.4814 MDSEEVSSVPSTPATPGAPLFGGNLRFEKPNVSRKSSFLRSCKCFSTVEQWTLEDGAKPRVSCSLPSPPIPLAKKVGAEFIGTFILMFAAIGTAIVNQKTHGSETLIGCAAANGLAVMIIIFSTGHISGAHLNPAVTISFAALKHFPWKNVPVYIGTQVLASVSAAFALKVVFHPFMSGGVTVPSVGYGQAFATEFIVSFILMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPATGSSMNPVRTLGPAIAANNYKGIWVYLIAPIFGTLCGAGAYTVVKLPEEEATKTTS* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0026 294 Pfam Major intrinsic protein 73 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra9g0026 294 ProSitePatterns MIP family signature. 131 139 IPR022357 -
Vra9g0026 294 SUPERFAMILY Aquaporin-like 71 288 IPR023271 -
Vra9g0026 294 PRINTS Major intrinsic protein family signature 74 93 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra9g0026 294 PRINTS Major intrinsic protein family signature 113 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra9g0026 294 PRINTS Major intrinsic protein family signature 150 169 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra9g0026 294 PRINTS Major intrinsic protein family signature 194 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra9g0026 294 PRINTS Major intrinsic protein family signature 225 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra9g0026 294 PRINTS Major intrinsic protein family signature 262 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra9g0026 294 Gene3D Glycerol uptake facilitator protein. 66 293 IPR023271 -
Vra9g0026 294 MobiDBLite consensus disorder prediction 1 22 - -
Vra9g0026 294 PANTHER BNAA02G36290D PROTEIN 3 289 - -
Vra9g0026 294 PANTHER AQUAPORIN NIP2-1 3 289 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0026 Vra-Chr9 199376 202151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0026 1 288 Major Intrinsic Protein MIP AT1G80760 74.150 2.35e-152 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0026 K09874 - gmx:100798410 527.324