Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0024 ATGGATCTTCAAAGGCAAGAGCCATGCCCTTCTGAGTGCTTGAACATCATCACATTTTCAGATACTATGCCATGCCAAAGATCTTCCATAGACACTCAAAGAAAGAGGAATCACACAGAAAGTGATGATCAAAAGCACCCAAATGACTCAAATCCTGGTGTCTTACTAGATCTAAGTCTCTCCAACAAGGATTCAGGTGATGATGAGTCAAAGCCAGAACTCAACCTCCTCAATTGTTTCCATACGAATTTCTCTGAAAATTCATCAGAATCTAGTCAGGGAAATGAACTGGATCCCCGGGTTTTCTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCTCAGGCACTTGGGGGACACCAGAATGCACACAAACGGGAAAGAACTTTAGCAAGAAGAGGATACAAAGCAGGTGCAGCAGATTTTGGACACACGTATTCCACCATGCCTTTTCTTCCTTCTCACGGCTTATACAACAAATCACTTGGAATTCAGGTTCATTCCATGATTAACAAACCTTCTTATCAAGCACCCATTTTTGGGCTATGCCGTTCCAATGGGTGGCAGAGGCAGCCTTTGGATTCACAACCAGCAATTGGAAATTTTCGTGTGGGGGCAGAATCTGAGTCATCCTTGGCTGATAGTGTTCCAAAAGTAGGCAAGTTTTCCACAAGGGTAGTGACAGAGGGATTTGGAGGTCACTGTTTTGGTAGCTTTTCTCATTTGAAGTCTAAACAAGAGAAGTTGCAGAAGCTTGACTTGTCCCTTAAGCTCTAA 777 0.4286 MDLQRQEPCPSECLNIITFSDTMPCQRSSIDTQRKRNHTESDDQKHPNDSNPGVLLDLSLSNKDSGDDESKPELNLLNCFHTNFSENSSESSQGNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAADFGHTYSTMPFLPSHGLYNKSLGIQVHSMINKPSYQAPIFGLCRSNGWQRQPLDSQPAIGNFRVGAESESSLADSVPKVGKFSTRVVTEGFGGHCFGSFSHLKSKQEKLQKLDLSLKL* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0024 258 Gene3D Classic Zinc Finger 80 141 - -
Vra9g0024 258 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Vra9g0024 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Vra9g0024 258 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 37 258 - -
Vra9g0024 258 SUPERFAMILY beta-beta-alpha zinc fingers 99 129 IPR036236 -
Vra9g0024 258 MobiDBLite consensus disorder prediction 25 72 - -
Vra9g0024 258 MobiDBLite consensus disorder prediction 31 47 - -
Vra9g0024 258 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 37 258 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0024 Vra-Chr9 180027 181850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0024 17 258 C2H2 Transcription Factor Family AT5G10970 40.698 1.82e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra9g0024 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0024 - - gmx:100816861 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0024 9 180027 181850 Vra9g0024 9 180027 181850 ECH