Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0012 ATGAACGACGAAATCTACTTACACGCGCCAACCACCGCCACCGCCACCGTTTTGCTTCCGAAACCTGAAACGGTGTCGTCAAACGAAACGGGGCTCGAAGGGATTGCCGCGGTTGTTGGAGAACACGTCCTTTTTGGAACGTCGTCGACGTTGCATGTTCCAGAGACGCCGAAGAAAATGGCTGGGGTGTCGGTGAACAAGAGTTACCGAGGAGTGAGGAAGCGACCGTGGGGGAGGTGGTCGGCGGAGATACGCGACCGGATCGGGCGGTGCCGCCACTGGCTGGGGACGTTCGACACGGCGGAGGAAGCGGCGCGTGCGTACGACGCGGCGGCGAGAAGACTTAGAGGCGCGAAGGCGAGGACCAACTTCAAGATACCCTCGGTGTTGCCTCTTTCTCCGACTTCGGAAGGTGGTGTCGTGAAGCCGAAAGCTGGCGGCAATAACGCCAGGAAGTGTTCTTCTGTGGAACAATTGTTCAGTGCTGCACCTCAAGTTCGAAGAAACGATGATGGTGGTGAGAATGTGAACGTGGATGTGAATTTGAAGCTGGGTGTGAGGAACAGTAGAATGGTTATTTAG 582 0.5636 MNDEIYLHAPTTATATVLLPKPETVSSNETGLEGIAAVVGEHVLFGTSSTLHVPETPKKMAGVSVNKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFKIPSVLPLSPTSEGGVVKPKAGGNNARKCSSVEQLFSAAPQVRRNDDGGENVNVDVNLKLGVRNSRMVI* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0012 193 Pfam AP2 domain 68 117 IPR001471 GO:0003700|GO:0006355
Vra9g0012 193 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Vra9g0012 193 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Vra9g0012 193 Gene3D AP2/ERF domain 67 126 IPR036955 GO:0003700|GO:0006355
Vra9g0012 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF084 25 172 - -
Vra9g0012 193 ProSiteProfiles AP2/ERF domain profile. 68 125 IPR001471 GO:0003700|GO:0006355
Vra9g0012 193 SUPERFAMILY DNA-binding domain 68 125 IPR016177 GO:0003677
Vra9g0012 193 CDD AP2 67 126 IPR001471 GO:0003700|GO:0006355
Vra9g0012 193 SMART rav1_2 68 131 IPR001471 GO:0003700|GO:0006355
Vra9g0012 193 Coils Coil 101 121 - -
Vra9g0012 193 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0012 Vra-Chr9 118648 119598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0012 20 131 AP2-EREBP Transcription Factor Family AT1G80580 60.163 2.44e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra9g0012 AP2 2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0012 - - gmx:102667667 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0012 9 118648 119598 Vra9g0012 9 118648 119598 ECH