Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0011 ATGGGGGAGCCATGCCAAAAATATTTCTTCTCGGATATGGATATACAAGATTTTGATTTCTTTAACCAAAGCCACAACAAGATTGAGTCACTTGATGATGAGGATCAGATCTTTCAGGAGATCATGCATCAATCAGCTTTCTCTTCTGACAGTGAAACTCACTCTCCCAAAGTTCAAACCAAATCAACCTACGCTGCCACAGCACTCACCAGCAATAACAGCAGCAACCTTGTGATGAAGAGCAACAGCTCCAATAATTTCCTCTTCTCATCACAACTTGCACCAGAGAAACCTGCCACAGCCATTTCTCCAACTGCGTACATTCTATCATTCAATGACTCCACCGTAGTTGCGGCTACCTGCCAAACCTATGATGGAAAACAGCCGTACCAAGAGGATGCAGTTGCAGGGAGTGGTGGCGCGTGTCTTCCCTCAAAAGGGGTCTCAGAAAAACATGAAATTGAACCTAAGACAAACTCAGCAACAAGAAAAGGTAGAAGTTCTGCAGAGACACTAGACCATATAATGACTGAGAGAAAAAGGAGACGGGAACTGACAGAGAGATTCATTGCACTTTCAGCCACCATACCTGGTTTGAAGAAGATTGACAAGGCCACCATACTTTGCGAAGCAATCACTTATGTGAAACGACTTAAAGAACGTGTAAGAGAACTGGAAGAGCAATGTAAGAGGACAAGGGTAGAGTCAGTGTCATTTGTTCATCAGAGATCCAACATTATATCTACTACTGATAAAGGCACAAGCTCAGGTGCAATGAAATCTGATGAATGCTATAAAACGAACGAAGCACTCCCTACAGTGGAAGCAAGAGTGTTTAAAAAGGATGTACTGATCCGGATTCACTGCAAGATACAACATGGCATTTTGATCAGAATTTTGGATTATCTTAATACTCTTGATCTCTCCACAACCAGCAACAGTGTAATGCCATTTGGAAGTTCAACTCTTGACATCAGCATTGTTGCTCAGATGGGTGAAAAATTCAACGCAACAATGACTGATCTAGTGAAAAACCTGAGACTGGTTCTGTTGCAGTCATCTGAAGTTCAAAAATCATCCATGCTAGTGAATCAATGA 1098 0.4199 MGEPCQKYFFSDMDIQDFDFFNQSHNKIESLDDEDQIFQEIMHQSAFSSDSETHSPKVQTKSTYAATALTSNNSSNLVMKSNSSNNFLFSSQLAPEKPATAISPTAYILSFNDSTVVAATCQTYDGKQPYQEDAVAGSGGACLPSKGVSEKHEIEPKTNSATRKGRSSAETLDHIMTERKRRRELTERFIALSATIPGLKKIDKATILCEAITYVKRLKERVRELEEQCKRTRVESVSFVHQRSNIISTTDKGTSSGAMKSDECYKTNEALPTVEARVFKKDVLIRIHCKIQHGILIRILDYLNTLDLSTTSNSVMPFGSSTLDISIVAQMGEKFNATMTDLVKNLRLVLLQSSEVQKSSMLVNQ* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0011 365 PANTHER BHLH TRANSCRIPTION FACTOR 6 352 - -
Vra9g0011 365 MobiDBLite consensus disorder prediction 146 168 - -
Vra9g0011 365 Gene3D - 159 235 IPR036638 GO:0046983
Vra9g0011 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 240 IPR036638 GO:0046983
Vra9g0011 365 SMART finulus 175 224 IPR011598 GO:0046983
Vra9g0011 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Vra9g0011 365 Coils Coil 215 235 - -
Vra9g0011 365 PANTHER TRANSCRIPTION FACTOR NAI1 6 352 - -
Vra9g0011 365 Pfam Helix-loop-helix DNA-binding domain 174 218 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0011 Vra-Chr9 109937 112014 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0011 153 350 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.865 2.19e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra9g0011 HLH 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0011 - - gmx:100777846 506.523