Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0010 ATGAAGGAGGTCTCATGGCAGAATAACTTGCATCTTCAAACGGAAATGGATTGCCAGAACGAGTTCTTCTACGACTATGACCCTATCAACGATGACTCTGATGATTTCTTCTCCGACATCATCCTTCAGCAGGCACCGCCCACGCCGTTCTCCTCCGAGAGCGAAAGCGATCACTCCTTTCGCGCTTCCAACACCGTCCACAACACTTCCTTCCTCCCCAGCGCCGCCGTTAACGCCGTCGCTTCCAAACGCTCCGCTCCCAGGACTTACATTCTCTCCTTCGATAGCTCAACGGTGGTACCCGCCACACCCGAACCCTCCGTCCCTTCTTCCCTTTTACCCGCTAAACGGGCCCTCCACACTCAAAGCCCCACAACCCGGCCCAATCAAGCATCCAAGAGAACCCGAACCTCTTCTCAGACCGTCGATCACATAATGGCCGAGAGAAAGAGGAGGCAAGAACTCACCGAGAGATTCATAGCACTCTCAGCCACCATTCCCGGCTTGAACAAGACGGACAAGGCTTCTGTGCTTCGAGCAGCGATCGATTATGTGAAACAACTGAAAGAAAAGGTAGATGAACTAGAGAAGCAAAACAGAAAGAGTGCAGCAGAGACAGTAATATTGGTGAATAAAAGCGATTCGAATGGAAACGAAGATAACAGCAACTCCACTGAAACGAACTGCAGCATCCTTCCTGAGATGGAAGCGAGAGTGTTGGGGAAGGAGGTGCTCATTGAGATCCACTGTGAGAAAGAATATGGGGTTGAGCTGAAAATACTTGACCATCTTGAAAATCTTCATCTCTGTGTCACCGGTAGCAGTGTTTTGCCATTTGGAAATTCTGCTCTCTGCATTACCATCACAGCTCAGATGGATGAGGAGTATGAGATGACAGTGAATGATCTAGTGAAAAACCTGAGAGAAGTTCTATCGAAGTCTCATTTGGTAAGTGACAGTGATCCGTACTAG 972 0.4907 MKEVSWQNNLHLQTEMDCQNEFFYDYDPINDDSDDFFSDIILQQAPPTPFSSESESDHSFRASNTVHNTSFLPSAAVNAVASKRSAPRTYILSFDSSTVVPATPEPSVPSSLLPAKRALHTQSPTTRPNQASKRTRTSSQTVDHIMAERKRRQELTERFIALSATIPGLNKTDKASVLRAAIDYVKQLKEKVDELEKQNRKSAAETVILVNKSDSNGNEDNSNSTETNCSILPEMEARVLGKEVLIEIHCEKEYGVELKILDHLENLHLCVTGSSVLPFGNSALCITITAQMDEEYEMTVNDLVKNLREVLSKSHLVSDSDPY* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0010 323 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 5 317 - -
Vra9g0010 323 MobiDBLite consensus disorder prediction 116 142 - -
Vra9g0010 323 SMART finulus 145 194 IPR011598 GO:0046983
Vra9g0010 323 MobiDBLite consensus disorder prediction 100 142 - -
Vra9g0010 323 PANTHER BHLH TRANSCRIPTION FACTOR 5 317 - -
Vra9g0010 323 Coils Coil 178 205 - -
Vra9g0010 323 Pfam Helix-loop-helix DNA-binding domain 143 189 IPR011598 GO:0046983
Vra9g0010 323 Gene3D - 136 208 IPR036638 GO:0046983
Vra9g0010 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Vra9g0010 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 208 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0010 Vra-Chr9 100931 103069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0010 96 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.892 5.08e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra9g0010 HLH 4.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0010 - - vra:106773514 595.119