Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0009 ATGATGGAGGACTCGTGGCAAAACTGGCTCTCTCATTTGGGAACGAGTGAAAACTTTGGCTGCACCACCATTGATGAGATGCTGTGGTTGAATAGTACTTGGCAGGGATGTGATAGCTCCAATAATGAGGTAGCATGTATGGAGTTAAAAGATGAACAGTCAGAGTGTTGTTGGAGTAAAAGGGGTGTGGAGAAGCATCAGGATTTGGAGGCAAAGGGAAGGGAGAAGAAAAGAACAAAAAGGGCAAGAACCTCTTCTGAGATAGAATATCACATCGTCTCAGAGAGAAAAAGGAGACAGAATATAGCAGAGAAATTCATAGCACTCTCAGCTACCATACCTGGCTTGAAGAAGATAGACAAGGCATCAATCCTTGGAGAAGCCGTAAAGTACATGCGACAACTCCAACAACGCATAGCAGAGTTGGAAAAAGCGAGCAATAATAACAGTGTAAAGTCGTTTATCATAGCCAAATCACACCTTTGTTCAGCATCATGTGAAGCAAATTCTACCATTGAAATGCTCCCTGAAGTTGAAGCAAGTGGGTTAGAGAATGAAGTGCTGATTAGAATCTACTGTGAGAAACGAAAGGACATCATGCTAAACCTAATGACCCTTCTAAAAGGTGTTCATCTCTCAGTAACCAGTAGCAGTGTACTGCCATTTGGAAACTCTCTTCTCAACATTGTCATTGTTGCTCGGATGAGTGAGGAGTTCAACTTGACGGTGACTGAGTTGGTTAAGACGTTGAAGCAGAATCTTTCGATGTTTTATGGTGTAACTGAGTGA 789 0.4233 MMEDSWQNWLSHLGTSENFGCTTIDEMLWLNSTWQGCDSSNNEVACMELKDEQSECCWSKRGVEKHQDLEAKGREKKRTKRARTSSEIEYHIVSERKRRQNIAEKFIALSATIPGLKKIDKASILGEAVKYMRQLQQRIAELEKASNNNSVKSFIIAKSHLCSASCEANSTIEMLPEVEASGLENEVLIRIYCEKRKDIMLNLMTLLKGVHLSVTSSSVLPFGNSLLNIVIVARMSEEFNLTVTELVKTLKQNLSMFYGVTE* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0009 262 Coils Coil 125 152 - -
Vra9g0009 262 Gene3D - 86 155 IPR036638 GO:0046983
Vra9g0009 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 86 135 IPR011598 GO:0046983
Vra9g0009 262 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 7 258 - -
Vra9g0009 262 Pfam Helix-loop-helix DNA-binding domain 91 136 IPR011598 GO:0046983
Vra9g0009 262 SMART finulus 92 141 IPR011598 GO:0046983
Vra9g0009 262 PANTHER BHLH TRANSCRIPTION FACTOR 7 258 - -
Vra9g0009 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 148 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0009 Vra-Chr9 93529 94782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0009 63 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.942 1.44e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra9g0009 HLH 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0009 - - gmx:100778916 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1945 5 25170158 25172728 Vra9g0009 9 93529 94782 PCT