Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0008 ATGTTTTTTCATGATTCCAATTCACACAGGCTGCACCTCCTCACTCTCTTCACTCACTCACTCATCTTACAGTTAGATCCAACCACTTTCTCTCTCTTGAAATCAATGGAGGAGTCAGGCGAAAATTGGCCTTCTGATTCTTACCTGGAAGTAGACGATGACGTTAAGGATTTGTGTTTCGATGACGAAGAATTCGCGAGCGAAGAGGATGACGGAGATTCCTTTCCTGAAATGAAAAATACCGACAGAAAACAGCGACAACAGAAACTCAGGGAGAGGTTCCTTGCACTCTCAGCAACAATACCTGGTTTCCAAAAGATGAATGAAAAGAAGGACAAGACTTCGATCCTAGACAAAGCTAGCAACTACGTGAGACAGCTTGAGCAACGAGTGAGAGAGCTGGAACAAGAAGTTCAATCGAACAAGGTTTGTGCGAGCAGCAGCAGTTGCTACGAAGTGAACTCCAATGGAGCAAATGCAATTCTTCCAGAAGTGAAAGTGAGAGTGTTGCAGAAGGAAGTGCTGATAATAGTTCACTGTGAGAAACAGAAAGGAATCGTGCTGAAAATACTATCACACCTCGAGAATATCAATCTCTCTGTACTCAACAGCAGCGTCTTGCGATTTGGAAAATCCACCATCGACATCACCATCATTGCTCAGATGGGTGAGGGATACCAGATGGGAGTGGATGAGCTGGTGGAAACACTGAGATTAATGATATTGAATCAGTAG 735 0.4381 MFFHDSNSHRLHLLTLFTHSLILQLDPTTFSLLKSMEESGENWPSDSYLEVDDDVKDLCFDDEEFASEEDDGDSFPEMKNTDRKQRQQKLRERFLALSATIPGFQKMNEKKDKTSILDKASNYVRQLEQRVRELEQEVQSNKVCASSSSCYEVNSNGANAILPEVKVRVLQKEVLIIVHCEKQKGIVLKILSHLENINLSVLNSSVLRFGKSTIDITIIAQMGEGYQMGVDELVETLRLMILNQ* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0008 244 Coils Coil 117 144 - -
Vra9g0008 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 127 IPR011598 GO:0046983
Vra9g0008 244 Pfam Helix-loop-helix DNA-binding domain 79 128 IPR011598 GO:0046983
Vra9g0008 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 142 IPR036638 GO:0046983
Vra9g0008 244 PANTHER BHLH TRANSCRIPTION FACTOR 80 243 - -
Vra9g0008 244 PANTHER PROTEIN, PUTATIVE-RELATED 80 243 - -
Vra9g0008 244 Gene3D - 77 143 IPR036638 GO:0046983
Vra9g0008 244 SMART finulus 80 133 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0008 Vra-Chr9 82294 86138 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0008 84 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.288 2.39e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra9g0008 HLH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0008 - - vra:106773517 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0008 9 82294 86138 Vra5g1946 5 25176268 25178275 PCT