Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2815 ATGGCTTTAGAGCAGGAATTGTCGCTGGGTCAGAATACGAATACGAATTCGAATAGGAATCCGAACCCAGTTGATTGCGTGGATGTTCGGGGTGAGGGTGGAGACGAGGGAGGGAAAGCGCCGAGACTGCCTCGGTGGACGAGGCAAGAAATTCTGGTTCTGATACAGGGAAAGAGAGACGCCGAGAACAAGTTCAGGAGGGGCCGAACGGCCGGATTGCCATTAGGGTCGGGTCAGGTGGAGCCCAAATGGGCATCGGTCTCTTCCTACTGCAGAAAGCATGGAGTCAACAGAGGTCCGGTTCAGTGCCGGAAAAGGTGGAGCAATTTGGCCGGAGACTACAAGAAGATCAAAGAATGGGAATCTCAGATAAGAGAGGAGTCGGATTCCTTTTGGGTCATGAGAAACGATTTAAGGAGAGACCGGAAATTGCCCGGATTTTTTGACAAGGAAGTTTATGATATTCTCGATTCAGGCTCCCAAGGTCCGGCGTTGGCTCTCGCTCTTTCATCGCCTCCTTCAGTGACAGTAACGGTGTGCAAGGACATGCGCATGGACATGGACACCAAAAGAGGGTATGCACCTGCCCCTTCCTCAGCCTCAGACGCTGCCCCTGCCCCTGCCCCTGCCCCTGCTGAGCCTGAGGAGCCTCACCTCTACGATAGTAATCGGAGCGTGCCTGTTGAGGATGGTTTGTTTTCAGATTTCGAACAAGATGAAGTCTCTGCCAGTCCCGAGAAGAAGGACATTTTTCCGCCCTCCAACAGGGACTTCCCTGCTCCCATTCCTATATCAGGTGTGACTAACGAGAAACAGTCTACTCCAAATCCAGAAATGGGTTCTACCTCTCAAGGAGAGCGGAAAAGGAAGCGATTATCAACTGAAGGAGGGGAGGAAACTTTGCAAATTCATTTAATTGATGTCTTAGAAAGAAATGGCAAGATGCTAAGTGCTCAACTTGAAGCGCAGAATATAAATTTCCAGTTGGATCGTGAGCAGCGGAAAATCAATGGTAGTAATTTGGTTGCCGTGCTTGATAAGCTTGCAGATGCTTTAGGGAGAATCGCTGATAAATTATAG 1080 0.4981 MALEQELSLGQNTNTNSNRNPNPVDCVDVRGEGGDEGGKAPRLPRWTRQEILVLIQGKRDAENKFRRGRTAGLPLGSGQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREESDSFWVMRNDLRRDRKLPGFFDKEVYDILDSGSQGPALALALSSPPSVTVTVCKDMRMDMDTKRGYAPAPSSASDAAPAPAPAPAEPEEPHLYDSNRSVPVEDGLFSDFEQDEVSASPEKKDIFPPSNRDFPAPIPISGVTNEKQSTPNPEMGSTSQGERKRKRLSTEGGEETLQIHLIDVLERNGKMLSAQLEAQNINFQLDREQRKINGSNLVAVLDKLADALGRIADKL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2815 359 MobiDBLite consensus disorder prediction 189 296 - -
Vra8g2815 359 Pfam Myb/SANT-like DNA-binding domain 45 134 IPR044822 -
Vra8g2815 359 MobiDBLite consensus disorder prediction 1 42 - -
Vra8g2815 359 MobiDBLite consensus disorder prediction 266 282 - -
Vra8g2815 359 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 20 359 - -
Vra8g2815 359 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 20 359 - -
Vra8g2815 359 ProSiteProfiles Myb-like domain profile. 45 111 IPR001005 -
Vra8g2815 359 MobiDBLite consensus disorder prediction 1 23 - -
Vra8g2815 359 Gene3D - 46 116 - -
Vra8g2815 359 CDD GT1 44 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2815 Vra-Chr8 45658681 45668735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2815 24 119 Trihelix Transcription Factor Family AT1G76890 26.042 3.56e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra8g2815 Myb_DNA-bind_4 8.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2815 - - vra:106771947 645.58