Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2805 ATGGGATCTTGCCTCTCCGTCGCGGGGGCACCATCGGATGCATGCGATGACCGGTTGTGGAGTCCAACCGAATTGTCGGATTATAGGATTGAAATGCGGGTTCACAGAGTTCCTGGGAGATTGTTCTTGAACGGTTCATCGCAGATTGCTTCCTTGTACTGCAGAAAAGGCTACGGAGAGATCAACCAGGATGCAATGCTTGTTTGGGACAACTTCTGTTCGAACGACGGCACCGTTTTATGCGGTGTCTTCGATGGCCACGGACCTTATGGCCATTTGGTTGCAAAGAAACTCAGGGATTCCTTTCCTTTAAAGCTCATGGCTCAGTGGAATTCCTCAAATCCTGACAGCACATACAGCAATCGCAATTTCTTTAGCACATCCATGAACAACGACTTGGAACCTTGTACCATTGCCCCAACTGAAATTGCGACGCTGAGACAATCTTTTATCACAGCTTCCAAGATCATGGACAGAGACCTCAGAATTCAGAATCAGATCGATTGCTCCTCTAGTGGCTCCACGGCTGTTACCTTGCTCAAGCAGGGCCACGACCTTCTTATTGCTAATGTGGGTGACTCCAGAGCTGTATTGGCTACCCATGACCGCAATGGTTCCCTTATTGCCATTCAGCTTACCACTGACCTTAAGCCTGATCTTCCAAGGGAAGCAGAGAGGATAAGGATTTGTAAGGGAAGAGTGTTCGCCCTTCAAAATGAACCGGGAATTTATAGATTATGGCTTCCCAATGTTGACTCCCCTGGGCTTGCCATGTCAAGGTCTTTTGGAGATTTTTGTCTCAAGGACTTTGGACTCGTCTCTGTTCCTGATCTCTCTTATCATCGCCTCAATCACAGGGATCAATTTGTTGTGTTAGCCACAGATGGGGTATGGGATGTTTTATCAAACGAAGAAGTTGTGTCCATTGTGTCATCTAGTCCACGCTCTTCAGCGGCTCGAATGCTGGTTGACGCAGCTGTTCATGCATGGAAAACCAAGCTTCCCACTTCTAAGGTTGATGATTGCTCTGTAGTTTGCCTCTTCCTTAATTCCATGTCGGACTCAAAACCATCGACTCCCAAAAAAGACCCATCAAATGTCGTTGAGCAGTAA 1113 0.4726 MGSCLSVAGAPSDACDDRLWSPTELSDYRIEMRVHRVPGRLFLNGSSQIASLYCRKGYGEINQDAMLVWDNFCSNDGTVLCGVFDGHGPYGHLVAKKLRDSFPLKLMAQWNSSNPDSTYSNRNFFSTSMNNDLEPCTIAPTEIATLRQSFITASKIMDRDLRIQNQIDCSSSGSTAVTLLKQGHDLLIANVGDSRAVLATHDRNGSLIAIQLTTDLKPDLPREAERIRICKGRVFALQNEPGIYRLWLPNVDSPGLAMSRSFGDFCLKDFGLVSVPDLSYHRLNHRDQFVVLATDGVWDVLSNEEVVSIVSSSPRSSAARMLVDAAVHAWKTKLPTSKVDDCSVVCLFLNSMSDSKPSTPKKDPSNVVEQ* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2805 370 Gene3D - 45 352 IPR036457 -
Vra8g2805 370 SMART PP2C_4 40 347 IPR001932 -
Vra8g2805 370 ProSiteProfiles PPM-type phosphatase domain profile. 46 349 IPR001932 -
Vra8g2805 370 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 1 353 - -
Vra8g2805 370 PANTHER ALPHABET, ISOFORM E-RELATED 1 353 - -
Vra8g2805 370 SUPERFAMILY PP2C-like 46 351 IPR036457 -
Vra8g2805 370 Pfam Protein phosphatase 2C 79 325 IPR001932 -
Vra8g2805 370 CDD PP2Cc 48 349 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2805 Vra-Chr8 45580146 45582167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2805 19 353 PP2C-type Phosphatase Gene Family AT1G16220 53.314 1.43e-132 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2805 - - var:108325448 593.964