Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2797 ATGAGGGCGACTTTTGTTAGCATTGGCATACGATACTATGAATGGGGTCGTGTTTGTAAAAAAGTGGCACGTGACCCAAATGGCAGTCAGCCAATGCAAATGCACAATGCGCAGGCAGTCTTAAAGTATTCCACAAGTGGCATACACCCACCAATGCCATCGCATCCATCTCTATCTAAATTGCTTATTTCTAAATCCTCCAACCAAACCAACTTGCTTTCTGCTTTCTACTTTCTCCATCTCCCTCTCCACTGTTCTCCACCCATGTATCCTTCTTCCTCCTCCTCTTCCTCTTCTTCTTCCTCTTCTCAATCCATGACCCACGCGCCAACTGGCCTCACGCGCTACGGCTCCGCACCGGGCTCTCTCCTCACCACCACCGTCGATGCTCTCATCGGAGGATCACGCCCCACCCCCACCCCCACCCCTTACTATTCCGGAGGAGACTCTTCCGACTCCACCTGCAAAGACCAAACATCATATCACAACCACGCCCTCGGATCCGCCTTGCTCCGTCAGAAAAGCTCTCCCGCCGGCTTCCTCTCCCACCTAGCTTCCACACCCACCGCCCCCACTCCCAATCACAACCACAATGGAGCGGGGTTCACAATCACGCGGGGTTCTCGTCTGAAGTCCCAGCTGAGCTTCACGGGTCACTGCCAAGAATCTCTCTGCGGCGGCGATAACACTAACAATGTGGTGCTTGGCGATCATGCCACCTTCGGAATGGAGCCTTGGGACAGTTCTCATTCTCATTCTAATTCCATCGCCTTTTCCGCTCCTCCAACTAAGCGCTCCAAAAGCTCCAACTCCAGCGATCAAGACATTCTCCATTGCCTCAACGCCTTGGAATCTCAGTTTAGCCTTCCACAGACCACTCTCGAAATGGCAACTGTCGAGAAGCTCTTGCACATTCCTGAAGACTCCGTCCCTTGTAAAATCCGTGCTAAGCGAGGCTGTGCCACTCATCCCCGCAGCATTGCTGAGCGGGAGAGAAGAACCAGAATAAGTGGAAAGCTCAAGAAATTGCAGGACCTTGTACCTAATATGGATAAGCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAGCATATTAAAGGTCTTCAAACACAGGTTCAGAAGCTTCACAAAGAACTTGAGAATTGCACTTGCGGATGCACACAAAGCAAATAA 1179 0.5123 MRATFVSIGIRYYEWGRVCKKVARDPNGSQPMQMHNAQAVLKYSTSGIHPPMPSHPSLSKLLISKSSNQTNLLSAFYFLHLPLHCSPPMYPSSSSSSSSSSSSQSMTHAPTGLTRYGSAPGSLLTTTVDALIGGSRPTPTPTPYYSGGDSSDSTCKDQTSYHNHALGSALLRQKSSPAGFLSHLASTPTAPTPNHNHNGAGFTITRGSRLKSQLSFTGHCQESLCGGDNTNNVVLGDHATFGMEPWDSSHSHSNSIAFSAPPTKRSKSSNSSDQDILHCLNALESQFSLPQTTLEMATVEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQTQVQKLHKELENCTCGCTQSK* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2797 392 CDD bHLH_AtbHLH_like 325 377 IPR045239 -
Vra8g2797 392 Pfam Helix-loop-helix DNA-binding domain 325 371 IPR011598 GO:0046983
Vra8g2797 392 Gene3D - 321 389 IPR036638 GO:0046983
Vra8g2797 392 MobiDBLite consensus disorder prediction 90 159 - -
Vra8g2797 392 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 112 385 - -
Vra8g2797 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 386 IPR036638 GO:0046983
Vra8g2797 392 PANTHER TRANSCRIPTION FACTOR BHLH129 112 385 - -
Vra8g2797 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 320 370 IPR011598 GO:0046983
Vra8g2797 392 SMART finulus 326 376 IPR011598 GO:0046983
Vra8g2797 392 MobiDBLite consensus disorder prediction 250 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2797 Vra-Chr8 45502702 45507494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2797 170 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 55.745 1.03e-69 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g2797 HLH 6.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2797 - - vra:106771988 757.288