Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2792 ATGCTCTTGCTCTTGCTCTTGCACTGCCACATCCAAATATTAGGGTTAGGGTTTCAGCTCAAACCAACTGTCAGTGGATCTATTCTCTGTTGCCTCTGCGTTTCCATGGATCATCGCAAGAGGGGGAGGTCTGAAGCTGCCTTCAATGTCAATGGCGCCGCCAAGAAATTCAGACCAGAAACGGACTCCTTTCCAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCTGGCTGTCCATTTGGTGAAGGATGTCATTTCCTGCATTATGTTCCTGGTGGCTTCAAAGCAGTCTCTCAGCTGATCAATGTTGGGAGCGATCCTGCTATTCCTCATGTTGGTAGAAATCCTATTCCACCATCCTTCCCTGATGGGTCTTCTCCTCCAGTTGTTAAAACCCGATTGTGCAACAAGTTTAATACGGCTGAGGGTTGCAAATTTGGTGACAAGTGTCACTTTGCCCATGGTGAGTGGGAGCTTGGCAGGCCTACGGCCCCATCATATGAAGATCCCCGTGTTATGGGACAAATGCCAAGCAGCAGAATAGGTGGACGTCTGGAGCCCCCACTTCCAGCTCATGGTGCAGCTGCCAGCTTTGGAGCCTCGGCCACTGCAAAAATCAGTATCAATGCCGCACTAGCTGGAGCAGTGATTGGAAAAGGAGGCGTCAACTCAAAGCAAATTTGTCGTGTGACAGGAGCTAAACTTGCCGTAAGGGATCATGACACGGATTCTAACCTCAGAAACATCGAGCTTGAAGGCAGTCTTGATCAGATCAAGCAAGCCAGTGCAATGGTACACGAACTTATTTTAAATCTTAGTTCTGCCTCTGGGCCTCCAATGAAGACCTTTACTACACAGACTTCTGCCCCGGCAAGCAACTTCAAGACCAAGCTCTGCGAAAACTTCGCTAAAGGTTCCTGCACTTTTGGGGAAAGGTGTCACTTCGCTCATGGAACTGATGATTTGCGCAAGACTGGAATATGA 1002 0.485 MLLLLLLHCHIQILGLGFQLKPTVSGSILCCLCVSMDHRKRGRSEAAFNVNGAAKKFRPETDSFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQLINVGSDPAIPHVGRNPIPPSFPDGSSPPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTAPSYEDPRVMGQMPSSRIGGRLEPPLPAHGAAASFGASATAKISINAALAGAVIGKGGVNSKQICRVTGAKLAVRDHDTDSNLRNIELEGSLDQIKQASAMVHELILNLSSASGPPMKTFTTQTSAPASNFKTKLCENFAKGSCTFGERCHFAHGTDDLRKTGI* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2792 333 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 300 324 IPR000571 GO:0046872
Vra8g2792 333 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 162 IPR000571 GO:0046872
Vra8g2792 333 ProSiteProfiles Zinc finger C3H1-type profile. 299 326 IPR000571 GO:0046872
Vra8g2792 333 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 52 38 331 - -
Vra8g2792 333 Pfam KH domain 210 272 IPR004088 GO:0003723
Vra8g2792 333 SUPERFAMILY CCCH zinc finger 298 329 IPR036855 GO:0046872
Vra8g2792 333 SUPERFAMILY CCCH zinc finger 70 95 IPR036855 GO:0046872
Vra8g2792 333 Pfam RNA-binding, Nab2-type zinc finger 74 94 - -
Vra8g2792 333 Gene3D K Homology domain, type 1 203 294 IPR036612 GO:0003723
Vra8g2792 333 ProSiteProfiles Type-1 KH domain profile. 207 271 - -
Vra8g2792 333 SMART kh_6 206 276 IPR004087 GO:0003676
Vra8g2792 333 ProSiteProfiles Zinc finger C3H1-type profile. 69 97 IPR000571 GO:0046872
Vra8g2792 333 SMART c3hfinal6 69 96 IPR000571 GO:0046872
Vra8g2792 333 SMART c3hfinal6 137 162 IPR000571 GO:0046872
Vra8g2792 333 SMART c3hfinal6 299 325 IPR000571 GO:0046872
Vra8g2792 333 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872
Vra8g2792 333 PANTHER CCCH ZINC FINGER/TIS11-RELATED 38 331 IPR045877 GO:0003729
Vra8g2792 333 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 198 278 IPR036612 GO:0003723
Vra8g2792 333 CDD KH-I 211 272 - -
Vra8g2792 333 Gene3D - 130 167 - -
Vra8g2792 333 Gene3D - 295 331 - -
Vra8g2792 333 SUPERFAMILY CCCH zinc finger 133 166 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2792 Vra-Chr8 45450285 45455853 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra8g2792 KH_1 2.8e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2792 - - gmx:100818781 558.91