Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2790 ATGCAAGAAGAGAATAACGCAGCAGGACAGTTGCTTCAGAAGTTCAAAGGCGTTGTGCCTCAACAAAACGGGAACTGGGGTGCACAGATATATGCAAACCACCAGAGAATCTGGTTGGGGACTTTCAAATCCGAAAGAGAGGCTGCAATGGCTTATGACAGCGCCAGCATAAAACTCAGAAGCGGAGACAGCCACAGAAACTTTCCATGGAACGATCAAACGGTGCAAGAGCATCAGTTTCAAAGCCATTACAGCACAGAAACAATGCTGAGCATGATTAGAGATGGGACCTACCCATCACGCTTTGCCACATTTCTGAGCACTCGTCAAACCCAACAAGGTGGTGTTCCCAAGCACGTAACTTTGAAGGGTGATTGCAAGGAGCAGCTTTGCTGCACCCAGCTTTTCCAGAAGGAGTTGACACCGAGTGATGTGGGGAAGCTCAACAGGCTTGTCATCCCGAAAAAGCATGCAGTCACATATTTTCCTAACGTGTCTGACGGCGGTGCAGAATCGCATGAAGAAAACGTGAGTGGTGACGTTGAGGTTGCGTTTTACGACAGGCTGATGAGACTGTGGAAATTTCGATACTGTTATTGGAAGAGCAGCCAAAGTTACGTGTTCACAAGAGGATGGAATCGGTTTGTGAAAGACAAAAAACTGAAGGCTAAGGATACCATTGCGTTTTTCATGTGCGAACCTGTGGATTGCAGAAAAGGAGGAGAGGGAGAAGCTTTTGGATTGATTGATGTAATCTATAATTCAGATGATGAAGACACCAAAGATGAAAACACTGTAAAGGATTTGAATGCAGAAAAGGGTTTGAAACTCTTTGGAGTTTTGATCAAATAG 852 0.4519 MQEENNAAGQLLQKFKGVVPQQNGNWGAQIYANHQRIWLGTFKSEREAAMAYDSASIKLRSGDSHRNFPWNDQTVQEHQFQSHYSTETMLSMIRDGTYPSRFATFLSTRQTQQGGVPKHVTLKGDCKEQLCCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPNVSDGGAESHEENVSGDVEVAFYDRLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIAFFMCEPVDCRKGGEGEAFGLIDVIYNSDDEDTKDENTVKDLNAEKGLKLFGVLIK* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2790 283 Pfam B3 DNA binding domain 136 230 IPR003340 GO:0003677
Vra8g2790 283 CDD AP2 13 71 IPR001471 GO:0003700|GO:0006355
Vra8g2790 283 Gene3D - 132 244 IPR015300 -
Vra8g2790 283 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
Vra8g2790 283 SMART B3_2 136 240 IPR003340 GO:0003677
Vra8g2790 283 SMART rav1_2 14 75 IPR001471 GO:0003700|GO:0006355
Vra8g2790 283 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
Vra8g2790 283 ProSiteProfiles AP2/ERF domain profile. 14 69 IPR001471 GO:0003700|GO:0006355
Vra8g2790 283 Pfam AP2 domain 14 60 IPR001471 GO:0003700|GO:0006355
Vra8g2790 283 SUPERFAMILY DNA-binding pseudobarrel domain 134 233 IPR015300 -
Vra8g2790 283 CDD B3_DNA 135 231 IPR003340 GO:0003677
Vra8g2790 283 ProSiteProfiles B3 DNA-binding domain profile. 136 255 IPR003340 GO:0003677
Vra8g2790 283 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 9 269 IPR044800 GO:0003700
Vra8g2790 283 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 9 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2790 Vra-Chr8 45441364 45442268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2790 7 283 RAV Transcription Factor Family AT1G50680 52.532 1.40e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra8g2790 B3 1.9e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2790 K09287 - gmx:102660503 418.313