Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2783 ATGATTTCTTCAAATTCCAGTTCCAATGCATCTTTGCTTTGCTTCCACCCTCAAGCAAAGATGAGTGCTACCAAAGTTCTTATTTGTGTGATTAGTGTTATCCTTCTTCCTTTGTTGCAACTCTCACTCGTATCTGCTGCTAAGACTAATAATGTTAGCATCGGTGATACCCTTATTGCAGGTAATGAGGGTGCTCAATGGCTCTCTCCATCAGGAGAGTTTGCATTTGGATTTCATCAGCCTGAGAGTTATTCCCTTTTCTTGGTTGCCATAAGATATCAAAACATACCTCGTGCCTCTTTCATTTGGTATGCAAATGGAGACAACCCTGCTCCTAAAGGCTCCACACTAGAGCTCAGTAAAAGCAGAGGGCTTGTGCTGAAAAACCCTCAGGGTGTTCAGCTATGGACATCTCAGCTCATATCAGGTACAATTTCCCATGGACTAATGAATGACACAGGCAACTTCCAGCTTCTTGGTGAGAATTCACAGATTTTGTGGGACAGCTTCAGCAATCCAACCGATACCTTGGTGCCAACTCAAACCATGGAGGTTAAAGGCACGCTTTCATCGCGCCAGAAAGAGACCAACTACACACGAGGAAGGTTCCAATTTCGCTTGCTTCCGGATGGTAATGCTGTGCTTAATCCTATAAATTTGCCTACCAACCGTACTTATGAGGCTCACTACATCAGTAACACTTATGATTCCAACAATAGAACAAACTCCGGTTTCCGAGTGATGTTTGATGATTCAGGATTTTATGTACTGAAGAGGAGCTATGAGAGGGTTTATATTACCAATCCAAATGATATGCTCTCAACCGATTCCTATTACTATAGAGCAACCATAAATTTTGATGGAACTTTCACCATATCCCGTTACCCGAAAAGTGGAGCTTCAAATCCAAGCTGGACAGTTATAAAGACATTGCCAGATGACATTTGCATGAATTTGGAATCAAGCACGGCTGGTAGTGGGGTCTGTGGATTCAATAGTATCTGCACTCTGGAAGCTGATCAAAGACCTAAGTGTACATGCCCAGAGGGTTATTCTCTTATTGATTCAAGTGATGAGTACGGCAGCTGCAGACCAAATTTGGAACTCGGTTGTGGAGGAAGTGGACAAAGCTTGCAAGAAGATATGTACTTCATGGAGGAAATGGCAAATACTGATTGGCCTCTATCAGATTTTGAGTTGTATGAACCTTACAACTCAGAGGACTGTAAGAATTCTTGCTTGCGAGATTGCTTATGTGCTGTTTCTATTTTTAGAGATGATAGCTGCTGGAAGAAGAAACTGCCTCTCTCAAATGGAAGACGGGGTGGAAAAGTTGAGGCATCTGCTTTCATTAAGTTGAGGAAGAATGATGCCTTGTCAGATAGTCCTTCAAATTCATTCATAAAAGAGAAGGAAAATGAAAAGGATCAAAACAATTTGGTAACAATGATATCGGTCCTTCTTGGGGGTTCTGTCTTTTTGAATCTCATAGTGATCAGTGCAGTATGTATTGGTTTCCCCTTATACTACAAGAAGAGAAGTTCTACAAATAATACTGTTGCAGAGAGCAATTTGCGCAGTTTCAGCTTTAGAGAGCTTGTGCAAGCAACAGATAACTTCAGAGAAGAATTGGGAAGGGGATCTTGTGGCATTGTCTTTAAAGGAAAAACAGATTTGGCCACTATTGCTGTCAAAAAACTGGACAAGTTGCTCAAAGACAGCGATAAGGAATTCAAAACAGAGGTGAATGTAATTGGCCAAACTCATCACAAAAACTTGGTTCGTCTGATTGGATATTGTGATGAGCTGGAACACCGGATTCTGGTGTATGAGTTCATGAGCAATGGCACTTTGGCAAATTTCCTTTTCGAAGATTTCAAACCTAGCTGGAACCAAAGAGTCCAGATTGCCTTTGGGATATCAAGAGGGCTGGTTTACTTGCACGAGGAATGCTTCACCCAGATCATCCATTGTGACATAAAGCCTCAAAATATACTTCTTGATGAGCATTACAACGCAAGAATATCAGATTTTGGATTGTCAAAGCTACTAATGATTAATCAGAGCCGTACAGAAACTGGCATTCGAGGAACAAAAGGGTATGTTGCACCAGACTGGTTCAGGAGTGCGCCGATCACAAACAAGGTTGATGTCTACAGTTTTGGTGTGCTGCTTTTGGAGATCATTTGTTGCAGGAGAAATGTAGATGATAAGTTTGAGATGGATGAGAAGGGCATTTTAACTGACTGGGCTTATGACTGCTATAGGGATGGAAGAATAGACATTCTGGTTGCAAATGACGATGAGGCTATGAATGACATAAATAAATTGGAAAGGTTTGTGATGGTAGCTATTTGGTGCCTTCAAGAGGATCCCTCTCTCAGGCCAACAATGAAGAAGGTGATGCTGATGCTGGAAGGAATAGCTCCAGTCACAATTCCACCAAGTCCCTGCCCTTATGCCTCTGTGACTGTTAGTTGCGGTTGA 2487 0.4186 MISSNSSSNASLLCFHPQAKMSATKVLICVISVILLPLLQLSLVSAAKTNNVSIGDTLIAGNEGAQWLSPSGEFAFGFHQPESYSLFLVAIRYQNIPRASFIWYANGDNPAPKGSTLELSKSRGLVLKNPQGVQLWTSQLISGTISHGLMNDTGNFQLLGENSQILWDSFSNPTDTLVPTQTMEVKGTLSSRQKETNYTRGRFQFRLLPDGNAVLNPINLPTNRTYEAHYISNTYDSNNRTNSGFRVMFDDSGFYVLKRSYERVYITNPNDMLSTDSYYYRATINFDGTFTISRYPKSGASNPSWTVIKTLPDDICMNLESSTAGSGVCGFNSICTLEADQRPKCTCPEGYSLIDSSDEYGSCRPNLELGCGGSGQSLQEDMYFMEEMANTDWPLSDFELYEPYNSEDCKNSCLRDCLCAVSIFRDDSCWKKKLPLSNGRRGGKVEASAFIKLRKNDALSDSPSNSFIKEKENEKDQNNLVTMISVLLGGSVFLNLIVISAVCIGFPLYYKKRSSTNNTVAESNLRSFSFRELVQATDNFREELGRGSCGIVFKGKTDLATIAVKKLDKLLKDSDKEFKTEVNVIGQTHHKNLVRLIGYCDELEHRILVYEFMSNGTLANFLFEDFKPSWNQRVQIAFGISRGLVYLHEECFTQIIHCDIKPQNILLDEHYNARISDFGLSKLLMINQSRTETGIRGTKGYVAPDWFRSAPITNKVDVYSFGVLLLEIICCRRNVDDKFEMDEKGILTDWAYDCYRDGRIDILVANDDEAMNDINKLERFVMVAIWCLQEDPSLRPTMKKVMLMLEGIAPVTIPPSPCPYASVTVSCG* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2783 828 Gene3D Transferase(Phosphotransferase) domain 1 613 812 - -
Vra8g2783 828 CDD STKc_IRAK 544 808 - -
Vra8g2783 828 Gene3D - 173 299 IPR036426 -
Vra8g2783 828 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 47 824 - -
Vra8g2783 828 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 47 824 - -
Vra8g2783 828 Pfam Protein kinase domain 541 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2783 828 SMART serkin_6 538 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2783 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 96 216 IPR036426 -
Vra8g2783 828 Pfam D-mannose binding lectin 101 187 IPR001480 -
Vra8g2783 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672|GO:0006468
Vra8g2783 828 Gene3D - 48 172 IPR036426 -
Vra8g2783 828 SMART blect_4 49 173 IPR001480 -
Vra8g2783 828 Gene3D Phosphorylase Kinase; domain 1 505 612 - -
Vra8g2783 828 ProSiteProfiles Bulb-type lectin domain profile. 49 171 IPR001480 -
Vra8g2783 828 SUPERFAMILY Protein kinase-like (PK-like) 516 806 IPR011009 -
Vra8g2783 828 PIRSF SRK 20 827 IPR024171 GO:0004674
Vra8g2783 828 ProSiteProfiles Protein kinase domain profile. 538 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2783 Vra-Chr8 45405988 45408661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2783 520 807 Receptor kinase-like Gene Family AT1G60800 41.892 4.51e-69 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra8g2783 Pkinase 7.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2783 - - vra:106771503 1665.97