Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2782 ATGCCGAGCTTCAATCCACAACTGCCCAATTCCAATGCATGCTATACAGAGGGAAGCGCAGTTGATTCTTTTCGTCTGTCTGACTTTGATCAATCAGTTGGATATCGCATAGAGGATGCTGTTGCCTTGAGTGGAAACTCAATTTTAGACTCACTTAAAGTAAGTAGCCAGACAATTTCTCGAGGTGTTATTCAACTTGGTTCCTTTGACAAGTTGCCAACTTCACTTGACAAAAGCATATTAACAAACCAAACAGAGCAGCAAAGCTTGCAATTCCAAAAGGTTCAAACATCAACTTTGGTTACTGTTGATACAGAACACCAGGAAGAGTTTGCCATGGCTGATGCCAGTCCTAGAACTGATATTTCTACAGATGCTGACACCGACGATAAGAATCCACAGTTTGATAGAAGTCAGGCCCTTGCTGCTGTGGCTTCTGACTCCAGTGACAGATCAAAAGATAAAACAGATCAGAAGACTCTCCGCAGGCTTGCTCAGAATCGTGAGGCTGCAAGAAAAAGCCGACTGAGAAAGAAAGCTTATGTTCAACAGCTGGAAAGTAGTCGTTTAAAGCTGACCCAACTGGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGAGTCTTTATATCGAGTTCAGGTGATCAAGCGCATTCAATGAGTGGAAATGGGGCCATGGCATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATAAATGAGCTAAGAGCAGCTGTAAATTCTCACGCAGGTGATACAGAACTCTGCATGATTATCGATGGTGTAATGGCACATTATGATGAGATATTTAGACTGAAGGCCAATGCAGCTAAGGCTGATGTCTTCCATTTGTTGTCTGGCATGTGGAAAACACCAGCCGAGAGGTGTTTCCTATGGCTTGGAGGTTTTCGGTCTTCTGAACTCCTAAAGCTGCTGGTAAATCAGTTGGAACCTCTGACAGAGCAGCAGTTAGTGGGTATCACAAACTTGCAGCAATCTTCCCAACAGGCTGAAGATGCATTGTCTCAGGGTATGGAAGCATTGCAGCAGTCCCTTTCGGAGACATTATCCACTGGATCACTTGGCTCCTCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGCAAATTAGGGACACTTGAGGGGTTCATTAAGCAGGCTGATAATCTGCGCCAGCAAACACTGCAACAAATTCATCGGATACTGACAACCCGGCAATCTGCTCGTGCACTGCTAGCAATACATGACTACTTTTCTAGGCTGCGTGCTCTTAGCTCTCTTTGGCTTGCTCGCCCAAGAGACTGA 1335 0.4547 MPSFNPQLPNSNACYTEGSAVDSFRLSDFDQSVGYRIEDAVALSGNSILDSLKVSSQTISRGVIQLGSFDKLPTSLDKSILTNQTEQQSLQFQKVQTSTLVTVDTEHQEEFAMADASPRTDISTDADTDDKNPQFDRSQALAAVASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGDQAHSMSGNGAMAFDAEYARWLEEQNRQINELRAAVNSHAGDTELCMIIDGVMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLSETLSTGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIKQADNLRQQTLQQIHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2782 444 CDD bZIP_HBP1b-like 159 211 - -
Vra8g2782 444 Pfam Seed dormancy control 241 316 IPR025422 GO:0006351|GO:0043565
Vra8g2782 444 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 162 177 IPR004827 GO:0003700|GO:0006355
Vra8g2782 444 Coils Coil 178 205 - -
Vra8g2782 444 Coils Coil 235 255 - -
Vra8g2782 444 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 46 444 - -
Vra8g2782 444 Pfam bZIP transcription factor 159 199 IPR004827 GO:0003700|GO:0006355
Vra8g2782 444 SMART brlzneu 155 218 IPR004827 GO:0003700|GO:0006355
Vra8g2782 444 ProSiteProfiles DOG1 domain profile. 224 441 IPR025422 GO:0006351|GO:0043565
Vra8g2782 444 PANTHER TRANSCRIPTION FACTOR TGA9 46 444 - -
Vra8g2782 444 MobiDBLite consensus disorder prediction 110 161 - -
Vra8g2782 444 Gene3D - 158 207 - -
Vra8g2782 444 SUPERFAMILY Leucine zipper domain 159 202 IPR046347 GO:0003700|GO:0006355
Vra8g2782 444 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 157 201 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2782 Vra-Chr8 45394513 45403111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2782 113 444 bZIP Transcription Factor Family AT3G12250 80.723 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra8g2782 DOG1 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2782 K14431 - gmx:100816123 723.776