Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2757 ATGGCAGCATGTTCAGTGATCGGAGTCATTGATGGGAAATTTGAAAGCGGGTACATAGTAACAGTGAGAATGGGTTCAGAGATACTGAAAGGTATACTTTATGAAGTACCACAGCAAACTCCATTGCCAACATCCCATCGAAGAAAGAAATCAGACACCAAAAAGAGAGTTCTTGTTCATCCAAAACATAGCAGAAGTGGCTACAATTTCTTCTATGCTGAACAGCATGCAACACTCAAGCCACTTCATCATGGAAAGGAGGGAGACATTCCTAGGATGATCGCTCAACTCTGGTCAAAGTTAAAACTATCCCAAAAGATGATTTATCAAGAGATGGCTATGAAGGATAAAGAAAGGTACATGGAAGAAATGGAGGATTATTTGGAGAAACTGAAAATGGATGCAGTTATCACTGATGCTGTGCCACTTCGACAATGGCCGCCCAAACAGGACACAGACATGTTGGATGAAGTTGAGACTAACAAAGGCAATTCGAGTGGAGAAGACTTGGAAGATGATTATAAAGCTGCAGATAGAGGTTTTGATATGAATTCAATGCTTCCTATAGGAATGGAGATTGAAACAAACTATTTGGGTTCAAAAGAAAACTCAATCGAGGAGGGCTTATAA 630 0.4016 MAACSVIGVIDGKFESGYIVTVRMGSEILKGILYEVPQQTPLPTSHRRKKSDTKKRVLVHPKHSRSGYNFFYAEQHATLKPLHHGKEGDIPRMIAQLWSKLKLSQKMIYQEMAMKDKERYMEEMEDYLEKLKMDAVITDAVPLRQWPPKQDTDMLDEVETNKGNSSGEDLEDDYKAADRGFDMNSMLPIGMEIETNYLGSKENSIEEGL* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2757 209 CDD HMGB-UBF_HMG-box 61 125 - -
Vra8g2757 209 Coils Coil 110 134 - -
Vra8g2757 209 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 6 173 - -
Vra8g2757 209 MobiDBLite consensus disorder prediction 150 172 - -
Vra8g2757 209 Gene3D High mobility group box domain 44 139 IPR036910 -
Vra8g2757 209 SUPERFAMILY HMG-box 49 132 IPR036910 -
Vra8g2757 209 MobiDBLite consensus disorder prediction 146 172 - -
Vra8g2757 209 Pfam HMG (high mobility group) box 61 127 IPR009071 -
Vra8g2757 209 SMART hmgende2 60 129 IPR009071 -
Vra8g2757 209 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 61 128 IPR009071 -
Vra8g2757 209 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2757 Vra-Chr8 45181151 45182196 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2757 1 154 ARID Transcription Factor Family AT1G04880 50.000 1.96e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vra8g2757 HMG_box 7.6e-12 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2757 - - vra:106770743 425.631