Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2746 ATGCATTTGCAGCAGATGAGTGAGCTAAAGAGAGGGCATGGCCACGCGGCCATTCGAAGTCGAGCAATGCCATTTCGAGCTCTCACGGTAACTGCAAGCTTGCGGCGGTCTCTTCGTTGTCTCCACCTTAGCTTCTGTTCTTTCTCTCTGTCAAAACCTCAGTTTTCTGCCAATTGTCACGATTTTTTGCCGTGGTTGGAGCGGAAAGCTGATTCTGCAGTTTCTTCCTCACTTTTCATTGGGAAATCTTCTTATGGAAGGTCTCTGTTTGCTTCCAAGACAATACAAACTGGAGATTGTATTTTAAAGGTTCCTTACAGAGTGCAAATAACTGCGGATAATCTCCCTCCTGAAATCAAATCTTTGATCGGTGAGGAAGTGGGAGATATTGCGAAACTTGCTATTGTTATTCTCATTGAGAAGAAAATGGGTCAGGGTTCTGAATGGCATCCTTATATCAGCCGTCTTCCACAGCAAGGGGAGCAACACAATACGGTATTTTGGAATGAAAGTGAGCTGGAGTTGATTCGTCCAAGTTCAGTTTATCAAGAAACTATTGACCATAAATCTCAAATTGAAAAGGATTTTTTGACAATCAAGCGTGTTTTTGAATCTTTCCATCTAAGTTTTGAAGATTTTACCTTCAAGGACTTCATGCATGCATGCACACTAGTTGGTTCTCGAGCATGGGGAAGCACAAAGGGTTTAGCTCTGATTCCATTTGCAGATTTCTTAAACCATGATGGACTTTCAGAAGCAATTGTAATGAGTGATGACGACAAACAATGCTCAGAAATTATTGCTGATCGTGACTATGCCCCTGGTGAACAGGTCCTAATAAGATATGGAAAGTTTTCAAATGCTACACTACTGCTGGACTTTGGTTTTTCAATTCCATACAACATTTACGATCAGGTTAAGGTCCAGTTTGATGTACCTAAACATGACCCTTTGCATGACATGAAGTTGGAACTCTTGCAACGAAACATTGTACCTCATCCTGAAGATATGGAGGACTTGACATATCCAGCGAATACCTTCAGTATTAAGGAGGTGAAGTCGGATAGAGGAAAAGGGAAGGGTCTTCCACAGTCACTTCGTGCGCTTGCTCGTGTTCTTTCTTGTACCACATCTCAGGAACTTGACGATTTGGTCGAGGAAGCTACTCAAAATGATGGCAGGCTGGCTAGGCGCCCTTTAAAGGATATCAGCAAAGAGATAGAAGCACACCTGATGTTGTTATCAGTATTTATCCAATTAATTGAGGAGCGCAATGCGATTATTATGTCACTGGGTTCTTGTCATAGCCCTCTCTTGTGTGAAAGACTTGCTGTTAGAAGAATAATGGCTCAAGATCTCCTACATGGTGAGCTTCGCATTCTCAAATCTGCTTCTGCCTGGCTGGAGAACTACTGTGTCTCCTTGACTTGA 1431 0.4249 MHLQQMSELKRGHGHAAIRSRAMPFRALTVTASLRRSLRCLHLSFCSFSLSKPQFSANCHDFLPWLERKADSAVSSSLFIGKSSYGRSLFASKTIQTGDCILKVPYRVQITADNLPPEIKSLIGEEVGDIAKLAIVILIEKKMGQGSEWHPYISRLPQQGEQHNTVFWNESELELIRPSSVYQETIDHKSQIEKDFLTIKRVFESFHLSFEDFTFKDFMHACTLVGSRAWGSTKGLALIPFADFLNHDGLSEAIVMSDDDKQCSEIIADRDYAPGEQVLIRYGKFSNATLLLDFGFSIPYNIYDQVKVQFDVPKHDPLHDMKLELLQRNIVPHPEDMEDLTYPANTFSIKEVKSDRGKGKGLPQSLRALARVLSCTTSQELDDLVEEATQNDGRLARRPLKDISKEIEAHLMLLSVFIQLIEERNAIIMSLGSCHSPLLCERLAVRRIMAQDLLHGELRILKSASAWLENYCVSLT* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2746 476 Pfam Rubisco LSMT substrate-binding 314 421 IPR015353 -
Vra8g2746 476 Pfam SET domain 86 283 IPR001214 GO:0005515
Vra8g2746 476 Gene3D set domain protein methyltransferase, domain 1 55 296 - -
Vra8g2746 476 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 55 470 - -
Vra8g2746 476 PANTHER OS01G0976450 PROTEIN 55 470 - -
Vra8g2746 476 SUPERFAMILY SET domain 59 301 IPR046341 -
Vra8g2746 476 Gene3D - 299 472 IPR036464 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra8g2746 SET 3.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2746 K19199 - gmx:100818002 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2746 8 45095497 45101816 Vra8g2746 8 45095497 45101816 ECH