Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2742 ATGTCATCTCGCATTCTTGCGGACAATTCATTACCGGTCAATAATGTCACCACTCCCTACTTCGACTTAATGGAAATGGACGACCTCACGCGCCGCCCCGCCTCCGCTGAGATGCCCACCCTCGGCCAGCTCCTCAAGCACGTCGGGGACGCCAGGAAGGAAGCCTCCGGCGACGGAAGTGAGACGCCGGTGCATCACGCGCTCGATATAGTTGACGCCGCCGGAGTTGGGCCTCGCTCTCTGCCATTCGTCCTCTCCTTCACCAACCTCACATACAGCGTCAAGGCGCGCCGCAAAATGAGCCTCTCCTCTGTCTTTCCCCGCCGTGGAAGCCGCCTCGGCGCGTCCGCGGTAGCCGAGGCACCTGCCGTCGGCGAGAGTATGTTCAGGCGGACCAAGACGCTGCTGAACGATATCTCCGGCGAGGCTCGCGACGGCGAGATCATGGCTGTACTCGGCGCCAGCGGTTCTGGAAAGTCAACACTGATCGACGCGCTGGCGAACCGAATCGCCAAGGGAAGTCTAAAAGGCACGGTGGCGCTGAACGGCGAAACGCTGGAATCGCGTCTTCTGAAGGTGATCTCTGCGTACGTGATGCAAGACGACCTGCTCTTCCCGATGCTCACCGTGGAAGAGACTTTGATGTTCGCAGCGGAGTTCAGACTTCCGCGCACGCTCTCCAAGTCGAAGAAAAACGCCCGCGTCCAGGCTCTCATCGAGCAGCTAGGTCTTCGGAACGCCGCGAAAACAGTTATCGGCGACGAAGGTCACCGCGGAGTATCAGGAGGAGAGCGTCGGAGAGTTTCCATCGGCATCGACATTATCCACGACCCCATCCTGCTGTTCTTGGACGAGCCAACCTCGGGACTTGACTCCACCAGCGCGTTCTTGGTGGTGAAGGTTTTGCAGAGAATCGCACAGAGCGGAAGCATCGTGATCATGTCCATTCACCAGCCGAGTTACCGAATCCTAGGGCTTCTGGACCGCATGATCTTCTTATCACGGGGCCAAACCGTTTACAGCGGTTCACCGTCGCAGTTACCGGTTTTCTTCTCCGAGTTCGGTCATCCTATTCCGGAAACCGACAACAGAACAGAGTTCGCGTTGGACCTGATTCGCGAACTGGAAGGCTCCCCCGGCGGAACGAAGAGCTTGGTCGAGTTCAACAAATCGTGGCAAAGCATGACGAAGCACCATCAAACGACAACGGAGGCGGAACGGAACGGGTTGTCGTTGAAGGAAGCAATAAGCGCAAGCATTTCGCGAGGGAAACTGGTTTCTGGCGCCACGAACACGAACCCGAACCCGTCGTCGATGGTGCCAACTTTTGCGAATCCGTTTTGGATTGAGATGGCGACGCTGTCGAAGCGGTCGTTCTTGAACTCGAGAAGAATGCCGGAGTTGTTTGGGATAAGATTGGGTGCGGTGATGGTGACGGGGTTCATTCTTGCGACCATGTTTTGGCAACTGGATAACTCTCCCAAAGGAGTGCAAGAGAGGCTGGGATTCTTCGCCTTTGCCATGTCAACAACTTTCTACACCACTGCCGACGCGCTTCCCGTCTTCCTCCAAGAACGCTACATTTTCATGAGGGAAACTGCTTACAACGCTTATAGAAGAATCTCCTATTTGGTCTCCCATGCGCTGGTTGCGTTGCCGGCACTAGCGTTTCTCTCGTTGGCTTTCGCGGCAACCACGTTCTGGGCCGTGGGCCTGGACGGTGGAGTCTCGGGGTTTTTGTTTTATTTCCTGATAATATTTGCGTCGTTTTGGGCTGGGAATTCGTTCGTGACGTTCCTTTCCGGTGTGGTGCCTCACGTGATGTTGGGTTACACGATCGTGGTTGCCATTCTGGCGTATTTCTTGCTGTTCAGTGGGTTCTTCATCAACAGGGATAGGATTCCCAGTTACTGGATTTGGTTCCACTACCTGTCACTGGTGAAGTATCCTTATGAAGCTGTTTTGCAGAACGAGTTCGATGACCCCGTTAAGTGCTTCGTGAGGGGAGTACAGATTTTCGATAACACGCCTCTTGGCTCGGTGCCCCAGGCTCTTAAGGTTAAGCTTTTGGACGCCATGAGCAACACTCTCGGAATGAACATCACCACCTCCACCTGTTTGACCACCGGTTCCGACATTTTGCGGCAGAACGGAGTCACCGATTTGACCAAGTGGAACTGCTTGTGGGTCACCGTCGCCTGGGGATTCTTCTTTAGATTCCTGTTCTACTTCTCCCTCTTGCTGGGTAGCAAGAACAAGAGGAGCTGA 2268 0.5507 MSSRILADNSLPVNNVTTPYFDLMEMDDLTRRPASAEMPTLGQLLKHVGDARKEASGDGSETPVHHALDIVDAAGVGPRSLPFVLSFTNLTYSVKARRKMSLSSVFPRRGSRLGASAVAEAPAVGESMFRRTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVALNGETLESRLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKNARVQALIEQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFLVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPSQLPVFFSEFGHPIPETDNRTEFALDLIRELEGSPGGTKSLVEFNKSWQSMTKHHQTTTEAERNGLSLKEAISASISRGKLVSGATNTNPNPSSMVPTFANPFWIEMATLSKRSFLNSRRMPELFGIRLGAVMVTGFILATMFWQLDNSPKGVQERLGFFAFAMSTTFYTTADALPVFLQERYIFMRETAYNAYRRISYLVSHALVALPALAFLSLAFAATTFWAVGLDGGVSGFLFYFLIIFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPSYWIWFHYLSLVKYPYEAVLQNEFDDPVKCFVRGVQIFDNTPLGSVPQALKVKLLDAMSNTLGMNITTSTCLTTGSDILRQNGVTDLTKWNCLWVTVAWGFFFRFLFYFSLLLGSKNKRS* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2742 755 Gene3D - 126 349 IPR027417 -
Vra8g2742 755 SMART AAA_5 145 337 IPR003593 -
Vra8g2742 755 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 119 360 IPR003439 GO:0005524
Vra8g2742 755 PANTHER ABC TRANSPORTER G FAMILY MEMBER 6-LIKE 15 749 - -
Vra8g2742 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 347 IPR027417 -
Vra8g2742 755 ProSitePatterns ABC transporters family signature. 260 274 IPR017871 GO:0005524
Vra8g2742 755 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 15 749 - -
Vra8g2742 755 Pfam ABC-2 type transporter 317 377 IPR043926 GO:0140359
Vra8g2742 755 Pfam ABC-2 type transporter 453 659 IPR013525 GO:0016020|GO:0140359
Vra8g2742 755 Pfam ABC transporter 136 288 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2742 Vra-Chr8 45058557 45061076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2742 135 347 Calmodulin-binding Proteins AT2G36910 29.091 7.58e-12 67.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2742 8 45058557 45061076 Vra8g2742 8 45058557 45061076 ECH