Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2728 ATGGCGAGGATTAAGGTTTACGAGCTGAGGCAGAAGACGAAAGCTGAACTCTTGAATCAGCTGAAGGACCTTAAGGCCGAGCTAGCCTTGCTTCGTGTTGCTAAGGTCACCGGAGGTGCCCCTAACAAGCTCTCCAAGATAAAAGTGGTCAGGTTGTCGATTGCCCAGGTTTTGACTGTGATTTCTCAGAAGCAAAAGGCTGCGTTGAGAGATGCCTACAAGAACAAGAAGTACTTGCCCCTTGATCTCCGCCCCAAGAAGACCAGGGCTATCCGCAGAAGGCTTACCAAGCACCAGGCTTCATTGAAGACTGAGAGGGAGAAGAAGAAAGAGACTTATTTCCCAATGAGGAAGTATGCTATCAAGGTGTAA 372 0.4866 MARIKVYELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALRDAYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKETYFPMRKYAIKV* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2728 123 Gene3D - 78 123 - -
Vra8g2728 123 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Vra8g2728 123 PANTHER 60S RIBOSOMAL PROTEIN L35-LIKE 1 123 - -
Vra8g2728 123 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Vra8g2728 123 TIGRFAM L29: ribosomal protein uL29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Vra8g2728 123 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Vra8g2728 123 CDD Ribosomal_L29_HIP 8 64 - -
Vra8g2728 123 Coils Coil 7 34 - -
Vra8g2728 123 PANTHER 60S RIBOSOMAL PROTEIN L35 1 123 IPR045059 GO:0000463|GO:0022625
Vra8g2728 123 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2728 Vra-Chr8 44969949 44971775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2728 1 123 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 88.618 4.34e-73 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2728 K02918 - gmx:100801539 228.794