Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2713 ATGATGGTTTCTCGGGGGCTGTTCGGGTGGTCCCCGCCACATATACAGCCTCTCACGCCGGTATCCGAGGTTTCGGAGCCGCCGGAGTCGCCGTCGCCGTATCTGGACCTCGGGGCCGAGACCTCCGCTTCGCAGCCGATGGAGGTCGAGGAAGAGATGGAGGAGGCTGAAGAGATTGAGCCGCCGCCCGCAGCCGTTCCCTTCTCTCACCTCTTCGCCTGCGCCGACCGCCTCGACTGGTTTCTCATGATCGTCGGCTCCCTCGCCGCCGCCGCGCACGGCACCGCTCTCGTCGTTTACTTGCATTACTTCGCCAAGGTTCTCTGGGTTCCTCAGCAGTTTTCGGCGGAAGATCAGATTCAGAGGTTCAAGGAGCTTGCTTTAACCATTGTTTATATTGCTGGTGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCGTGTTGGATTCTTACTGGAGAACGGCAGACTGCTGTGATCAGATCAAAATATGTCCAAGTATTACTTAACCAAGATATGAGTTTTTTTGATACTTATGGAAATAATGGAGACATTGTGAGTCAAGTATTAAGTGATGTGCTGCTCATTCAGTCTGCTCTTAGTGAAAAGGTTGGGAATTATATTCATAATATGGCAACATTCTTCAGTGGTCTTGTTATTGCTTTTATCAATTGTTGGCAGATTGCATTGATAACATTAGCTACAGGTCCATTTATTGTTGCTGCAGGAGGAATATCAAATATATTCCTCCACAGGCTTGCCGAGAATATTCAAGATGCATATGCTGAAGCAGCCAGCATTGCTGAACAGGCAGTTTCCTATATAAGGACCTTGTATGCATTTACAAATGAAACATTGTCTAAATATTCATATGCAACATCGCTACAAGCTACTCTTAGATATGGTATATTGATAAGTCTTGTTCAAGGGCTTGGCCTTGGTTTTACTTATGGACTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGGCTCCTGGTTATACATGGAAAAGCTCATGGTGGTGAAATTATAACAGCTCTGTTTGCTGTGATTCTCAGTGGCTTGGGATTGAATCAAGCAGCGACAAATTTCTACTCATTTGATCAAGGGCGCATAGCTGCCTATAGACTATTTGAGATGATTAGCCGGTCATCCTCATCTTTTAATCACGATGGCAGTGCTCCAGCTTCTGTGCAAGGAAATATAGAGTTTCGGAATGTATACTTCAGTTATCTTTCTCGCCCTGAAATCCCTATCTTGAGTGGGTTTTATCTCACTGTTCCTGCTAAAAAGACTGTGGCACTTGTTGGAAGAAATGGCTCTGGTAAAAGTAGTATTATTCCCCTTATGGAGCGATTCTATGATCCAACTTTAGGGGAAGTTCTTTTAGATGGTGAAAATATAAAGAATATGAAACTGGAATGGTTAAGGAGTCAGATAGGACTGGTCACCCAGGAACCTGCTTTACTCAGTTTGAGTATAAGAGACAACATTGCTTATGGCAGAGATACTACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACCTTTATCAGCTCATTAGATAAAGGTTATGACACACAGGTTGGCAGGGCAGGTCTAGCTTTAACAGAAGAGCAGAAAATAAAGCTTTCTATTGCAAGAGCTGTGCTTTTAAATCCATCCATTCTTCTTCTTGACGAGGTTACTGGCGGACTTGATTTTGAGGCTGAGAGGTCTGTTCAGGAAGCTCTGGACCTGCTAATGTTGGGACGCTCAACGATAATAATTGCTCGAAGGCTTAGTCTTATAAAGAATGCTGATTATATAGCTGTCATGGAGGATGGTCAACTTGTTGAAATGGGTACACATGATGAGTTACTGACCCTGGACGGCTTATATGCAGAGCTTCTTCGATGTGAAGAAGCCACAAAACTTCCCAAGAGGATGCCAGTTCGAAACTATAAGGAGACTGCAACTTTCCAAATTGAGAAGGATTCTTCAGAAAGTCACAGCTTCAAAGAACCTTCATCTCCTAAAATGATAAAGTCACCCTCTCTTCAAAGAGTTTCTGCCATTTTTCGGCCTTCGGATGGCTTTTTTAATTCACAAGAATCACCAAAAATTCGGAGCCCACCATCAGAGAAGATGATGGAAAATGGAGATTCAACAGACAAGGAGCCATCAATTAAAAGGCAGGATAGTTTTGAAATGAGACTACCAGAGTTACCCAAGATTGATGTTCAATGTGTGCATAGACAAAAGTCAAATGGTTCTGACCCAGAATCCCCTGTTTCACCTCTTTTAACATCTGATCCTAAAAATGAACGCTCCCATTCACAGACTTTTAGCAGGCCTGATAGTCATTCTGGTGATCTTTCGGTGAAAATGACTGAAACAAAGGATGCGAGGCATCGAAAACAACCCTCAATATGGAGGCTAGCAGAACTTAGTTTTGCAGAGTGGCTTTATGCTGTGTTAGGAAGCACAGGTGCTGCTATCTTTGGTTCTTTCAATCCCCTTCTTGCCTATGTTATTGGTCTGGTGGTGACAGATTACTATAAAATTGATGAAGAACATCACTTCCAAAGGGAGATAGACAAATGGTGCTTGATCATTGCCTGCATGGGTATTGTGACGGTTGTTGCTAACTTTTTACAGCATTTCTACTTTGGTATTATGGGGGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTTCGCAATGAAACTGGATGGTTTGATGAAGAGGAAAATAGTGCTGACAACCTATCAATACGCTTGGCCAATGATGCTACATTTGTGCGAGCAGCTTTCAGTAACCGCCTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGCATTTCTCATTGGTGTTTTGCTGCACTGGCGATTAGCACTTGTGGCTTTAGCAACACTTCCGATTCTTTGTGTTTCTGCTGTTGCCCAGAAATTGTGGCTTGCTGGATTTTCAAAGGGCATACAAGAAATGCACAGAAAGGCATCCTTGGTTCTTGAAGACGCAGTTAGGAATATTTACACTGTTGTTGCATTTTGTGCTGGTAATAAGGTGATGGAACTCTACCAGTTGCAGTTAAATAAAATATTTAAGCAAAGCTTTCTTCATGGAGTGGCCATTGGTTTTGCATTTGGCTTTTCACAGTTTCTGCTCTTTGCATGTAATGCCCTTCTACTTTGGTACACTGCAATTTGTGTTAATAAGAAATATGTGGATACACCTACTGCTCTCAAGGAATACATGGTTTTCTCATTTGCTACATTTGCCCTTGTGGAGCCTTTTGGGTTGGCTCCTTACATACTTAAGCGACGTAAATCTCTCATATCAGTGTTTGAAATTATAGATCGTGTGCCTAAGATTGATCCTGATGATAACAAAGCAATGAAGCCACCCAATGTATATGGGAGCATTGAGTTGAAAAATGTTGATTTTTGTTATCCTTCCCGGCCAGAAGTGTTGGTATTAAGCAATTTTAGCCTCAAAGTCAATGGAGGGCAAACAATTGCTGTAGTGGGAGTTTCGGGGTCAGGGAAGAGCACAATAATATCTTTGATCGAGAGATTCTATGATCCAGTTTCTGGCCAAGTTTTGCTAGATGGAAGGGATTTAAAGCAATATAATTTGAGATGGTTGAGGAGCCACCTTGGTCTGGTTCAGCAGGAACCAATTATTTTCTCAACAACCATAAGGGAAAACATCATATATGCCAGGCATAATGCCAGTGAAGCTGAAATAAAGGAGGCTGCAAGAATAGCAAATGCTCATCACTTCATCAGTAGTTTGCCTCATGGTTATGACACTCATGTTGGGATGAGAGGTGTTGACTTAACCCCTGGACAAAAACAGAGAATTGCAATTGCAAGGGTAATTCTTAAAAATGCTCCTATTCTGTTGCTGGATGAAGCTAGTTCATCAATTGAATCTGAGTCAAGCCGAGTGGTGCAAGAGGCTCTAGACACCCTAGTAATGGGAAACAAAACCACTATTTTAATAGCACACAGAGCTGCAATGATGAGGCACGTGGACAACATAGTAGTTCTAAATGGAGGAAGGATAGTGGAGGAGGGGACACATGATTCATTGGTGGCAAAAAATGGTCTGTATGTCCGATTGATGCAACCTCATTTTGGTAAGGCTTTGCGTCAGCATCGGCTTGTTTAG 4191 0.4262 MMVSRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDLGAETSASQPMEVEEEMEEAEEIEPPPAAVPFSHLFACADRLDWFLMIVGSLAAAAHGTALVVYLHYFAKVLWVPQQFSAEDQIQRFKELALTIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLSKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRLLVIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSFNHDGSAPASVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNMKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDTTMDQIEEAAKIAHAHTFISSLDKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEDGQLVEMGTHDELLTLDGLYAELLRCEEATKLPKRMPVRNYKETATFQIEKDSSESHSFKEPSSPKMIKSPSLQRVSAIFRPSDGFFNSQESPKIRSPPSEKMMENGDSTDKEPSIKRQDSFEMRLPELPKIDVQCVHRQKSNGSDPESPVSPLLTSDPKNERSHSQTFSRPDSHSGDLSVKMTETKDARHRKQPSIWRLAELSFAEWLYAVLGSTGAAIFGSFNPLLAYVIGLVVTDYYKIDEEHHFQREIDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNETGWFDEEENSADNLSIRLANDATFVRAAFSNRLSIFIQDSAAVIVAFLIGVLLHWRLALVALATLPILCVSAVAQKLWLAGFSKGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYQLQLNKIFKQSFLHGVAIGFAFGFSQFLLFACNALLLWYTAICVNKKYVDTPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDNKAMKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTIAVVGVSGSGKSTIISLIERFYDPVSGQVLLDGRDLKQYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEIKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVILKNAPILLLDEASSSIESESSRVVQEALDTLVMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLVAKNGLYVRLMQPHFGKALRQHRLV* 1397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2713 1396 Pfam ABC transporter 424 568 IPR003439 GO:0005524
Vra8g2713 1396 Pfam ABC transporter 1165 1313 IPR003439 GO:0005524
Vra8g2713 1396 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 81 370 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g2713 1396 SUPERFAMILY ABC transporter transmembrane region 811 1132 IPR036640 GO:0005524|GO:0016021
Vra8g2713 1396 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 378 - -
Vra8g2713 1396 Gene3D - 401 652 IPR027417 -
Vra8g2713 1396 Gene3D - 1145 1384 IPR027417 -
Vra8g2713 1396 MobiDBLite consensus disorder prediction 19 45 - -
Vra8g2713 1396 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 403 638 IPR003439 GO:0005524
Vra8g2713 1396 Pfam ABC transporter transmembrane region 84 353 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g2713 1396 Pfam ABC transporter transmembrane region 832 1081 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g2713 1396 MobiDBLite consensus disorder prediction 661 729 - -
Vra8g2713 1396 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1147 1384 IPR003439 GO:0005524
Vra8g2713 1396 SMART AAA_5 430 609 IPR003593 -
Vra8g2713 1396 SMART AAA_5 1174 1361 IPR003593 -
Vra8g2713 1396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 637 IPR027417 -
Vra8g2713 1396 Gene3D ABC transporter type 1, transmembrane domain 1116 1144 IPR036640 GO:0005524|GO:0016021
Vra8g2713 1396 Gene3D ABC transporter type 1, transmembrane domain 790 1110 IPR036640 GO:0005524|GO:0016021
Vra8g2713 1396 Gene3D ABC transporter type 1, transmembrane domain 128 670 IPR036640 GO:0005524|GO:0016021
Vra8g2713 1396 PANTHER ABC TRANSPORTER B FAMILY 19 1392 - -
Vra8g2713 1396 SUPERFAMILY ABC transporter transmembrane region 71 378 IPR036640 GO:0005524|GO:0016021
Vra8g2713 1396 MobiDBLite consensus disorder prediction 751 775 - -
Vra8g2713 1396 CDD ABC_6TM_Pgp_ABCB1_D2_like 819 1130 - -
Vra8g2713 1396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1135 1383 IPR027417 -
Vra8g2713 1396 PANTHER ABC TRANSPORTER B FAMILY MEMBER 20-RELATED 19 1392 - -
Vra8g2713 1396 Coils Coil 249 269 - -
Vra8g2713 1396 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 824 1116 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g2713 1396 MobiDBLite consensus disorder prediction 751 800 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2713 Vra-Chr8 44824778 44834457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2713 46 696 Calmodulin-binding Proteins AT2G36910 43.399 1.11e-162 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2713 K05658 - gmx:100799399 2598.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2713 8 44824778 44834457 Vra8g2713 8 44824778 44834457 ECH