Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2710 ATGGTTCTATCAAACAAGAAACTGAAGCTTAAGCTCAGAGCTGAATTGGCCCAACAACAGAATAATATCAACGAAGTTCCTTCATCTTCGAACTCTCTCAAATCTCTTTTGGACGCTGCCACCCCCACACCCAGATTGTCCAAGCGAGACAAACACCGAAAGCTTCGATCTTCCGAACATCCTCCAAAAGAAGCCAACAAGGAAACTGAAACTGAAATAGAGGGTTCGGCCAATAAGAAAAACAAGAAGAGAAAGAGGAAGGTAGAGGGAGATGACGTGGCAAACGAAGTTCCCGACAACACACCACAGAAAAACAGCAAGAAGAAGAAGAAGAAGAAGAAGCTGAAGAAGAACAAGAAAAAACCCAAAACCGCGGAGGAAAATGGTTCTAATGGTGGAGGGGAAGTGCCTGAGGCTACAGAGTTAACCAAGACCAATACAACTACCAGTCAAGACAATGGTGATGTTCCTACAAAGGTTTATGTTGGAGGAATTCCTTATTATTCAACCGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATAACTGAAGTTGATTGCATGTATTTTCCTGAAAGTGGCAAGTTTAGAGGGATTGCCATTATTAGTTTTAAGACCGAAGCAGCAGCTAAACGGGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAAGCATATAAAGCAACGCGAGCCAATAAAACATCGGATTTTGCTCCAGAAATTTTGGAGGGGTACAATAGAGTGTATGTTGGGAATTTGTCATGGGATATAACAGAGGAGGAACTGAGGAAATTCTTCAATAACTGTGAGATAACGTCTATACGATTTGGTATGGATAAGGAGACGGGAGAGTTTCGAGGGTATGCTCATGTGGATTTCGGTGATAGTCAGTCACTGAAAACAGCACTTACATTGGACCAAAATGTTTTGTTTGGGAGACCTGTCAGGATAAGTTGTGCGGTTCCTCTGATTAAAAAACCAGGAACTCGTAAAAGCTCGACAGTTAATGAAGCTAATGGTGATAAATCAACTTCCTCAGGAAGTGGCAAGATGAATGGAGCTGATGGTGATAAATCAAGTTCCACAGTAAGTGGCAAGATGAAGAGAAGGACGTGCTATGAATGTGGTGAGAAAGGACATGGTTTTTCGGAATGTCCTAAGAAACAAACAGGTGCTGCAACTACAACCTAA 1212 0.4216 MVLSNKKLKLKLRAELAQQQNNINEVPSSSNSLKSLLDAATPTPRLSKRDKHRKLRSSEHPPKEANKETETEIEGSANKKNKKRKRKVEGDDVANEVPDNTPQKNSKKKKKKKKLKKNKKKPKTAEENGSNGGGEVPEATELTKTNTTTSQDNGDVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMYFPESGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQAYKATRANKTSDFAPEILEGYNRVYVGNLSWDITEEELRKFFNNCEITSIRFGMDKETGEFRGYAHVDFGDSQSLKTALTLDQNVLFGRPVRISCAVPLIKKPGTRKSSTVNEANGDKSTSSGSGKMNGADGDKSSSTVSGKMKRRTCYECGEKGHGFSECPKKQTGAATTT* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2710 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 235 IPR000504 GO:0003723
Vra8g2710 403 SUPERFAMILY Retrovirus zinc finger-like domains 371 398 IPR036875 GO:0003676|GO:0008270
Vra8g2710 403 MobiDBLite consensus disorder prediction 336 403 - -
Vra8g2710 403 Gene3D - 348 403 - -
Vra8g2710 403 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 57 398 - -
Vra8g2710 403 MobiDBLite consensus disorder prediction 57 94 - -
Vra8g2710 403 SMART rrm1_1 254 325 IPR000504 GO:0003723
Vra8g2710 403 SMART rrm1_1 159 231 IPR000504 GO:0003723
Vra8g2710 403 MobiDBLite consensus disorder prediction 105 120 - -
Vra8g2710 403 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 57 398 - -
Vra8g2710 403 SUPERFAMILY RNA-binding domain, RBD 246 338 IPR035979 GO:0003676
Vra8g2710 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 329 IPR000504 GO:0003723
Vra8g2710 403 Gene3D - 249 333 IPR012677 -
Vra8g2710 403 MobiDBLite consensus disorder prediction 19 139 - -
Vra8g2710 403 MobiDBLite consensus disorder prediction 19 38 - -
Vra8g2710 403 CDD RRM1_PHIP1 160 231 IPR034361 -
Vra8g2710 403 MobiDBLite consensus disorder prediction 377 391 - -
Vra8g2710 403 Gene3D - 94 245 IPR012677 -
Vra8g2710 403 ProSiteProfiles Zinc finger CCHC-type profile. 379 394 IPR001878 GO:0003676|GO:0008270
Vra8g2710 403 Coils Coil 66 86 - -
Vra8g2710 403 SUPERFAMILY RNA-binding domain, RBD 153 234 IPR035979 GO:0003676
Vra8g2710 403 MobiDBLite consensus disorder prediction 336 374 - -
Vra8g2710 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 226 IPR000504 GO:0003723
Vra8g2710 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 322 IPR000504 GO:0003723
Vra8g2710 403 CDD RRM2_PHIP1 254 325 IPR034362 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2710 Vra-Chr8 44815923 44817891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2710 158 327 Eukaryotic Initiation Factors Gene Family AT2G36660 26.519 4.54e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2710 - - gmx:100817668 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2710 8 44815923 44817891 Vra8g2710 8 44815923 44817891 ECH