Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2706 ATGAAGAGAGAAAGAGAAGTTGATAGCGTAACCATGGCCAACTACTTGATGTTGCTTTCTGCAGGAGGTGAATTTGAGAAGACAAACTACTTGAACTACTCTTCCAACCACCGTGTGTTTGAGTGCAAGACGTGTAAGAGGCAGTTTCCGTCGTTTCAAGCCTTGGGAGGGCACCGTGCGAGTCACAAGAAACCTAGGTTGATGGGAGAGAGTGAGCATAGCCAAGTTCTTCATGGTTCACCACCAAAACCTAAGACTCATGAGTGTTCAGTCTGTGGTTTGGAGTTTGCGATAGGGCAAGCTTTGGGAGGACACATGAGACGCCATAGAACATCATCAAATGGAAACATGAACAATGCTACTGCTACCACTGTTCATAATACTTCTTCACCAAAAATGAACCACAAGGGTAGCAGCAACGAGAGAGTTCTGTTCCCTGATCTGAATTTGACGCCATTAGAGAATGATTTGGAGTTTTTGAAGATCAGACAACCAGCTCCTTTGGTTCACTGCTTCAATTGA 522 0.4464 MKREREVDSVTMANYLMLLSAGGEFEKTNYLNYSSNHRVFECKTCKRQFPSFQALGGHRASHKKPRLMGESEHSQVLHGSPPKPKTHECSVCGLEFAIGQALGGHMRRHRTSSNGNMNNATATTVHNTSSPKMNHKGSSNERVLFPDLNLTPLENDLEFLKIRQPAPLVHCFN* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2706 173 SUPERFAMILY beta-beta-alpha zinc fingers 38 109 IPR036236 -
Vra8g2706 173 SMART c2h2final6 40 62 IPR013087 -
Vra8g2706 173 SMART c2h2final6 87 109 IPR013087 -
Vra8g2706 173 PANTHER ZINC FINGER PROTEIN ZAT12 11 164 - -
Vra8g2706 173 MobiDBLite consensus disorder prediction 56 84 - -
Vra8g2706 173 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Vra8g2706 173 Gene3D Classic Zinc Finger 37 109 - -
Vra8g2706 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Vra8g2706 173 Pfam C2H2-type zinc finger 87 111 - -
Vra8g2706 173 Pfam C2H2-type zinc finger 39 65 - -
Vra8g2706 173 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Vra8g2706 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Vra8g2706 173 PANTHER ZINC FINGER PROTEIN ZAT5 11 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2706 Vra-Chr8 44795687 44796509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2706 1 160 C2H2 Transcription Factor Family AT2G37430 43.114 4.79e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g2706 zf-C2H2_6 9.1e-10 CL0361